BS19789.complete Sequence
1952 bp assembled on 2011-01-28
GenBank Submission: KX804617
> BS19789.complete
GAAGTTATCAGTCGACATGCACGTGGCCAGCATTGAGAAGCTTCCCTTGA
GCACGACAGGATCTCCGCTACTCATCCGCTGCAAGACCTTCCTCTCCGTA
ACTTTCGTCATTCCCAAGGACTCCGAGTGCCACGATGTCTACACTTCGCT
GCTGAAACTCTTCCAGCCGGTGTCCATCAACAAATTGTACTGCTTCAACT
ACCAGCCGAACAAGGATGATTTCCCCAAGAACGCTGGCTGGGATTACTTT
AAACTGGAGGCGGAGTTCAAGCACATGCTGGTGCCCAACGAGGCCTGGAC
GCTGTGCTCCATGAACGAGAAGTACGAGCTGTGCGACACCTATCCGCGTC
AGATTTACGTGCCCAAGGAGGCCACCACGCTGATGCTCATCAGCAGCTCG
CGATTCCGCTCCAAGGGGCGGCTGCCAGTGCTCACCTATCTGCACAACAA
CAAGGCTTCCATCTGCCGCTGCAGTCAGCCCCTGTCCGGATTCAGTGCCC
GCTGTCTGGAGGATGAGCAGATGCTGGAGGCCATACGCAAGACGAATTCC
AACACGGACTACATGTATGTGGTGGACACGCGACCGCGGATTAATGCCAT
GGCAAACAGAGCCGCCGGCAAGGGATACGAGAACGAGGCCTTCTACGAGA
ACATCAAATTCCACTTCCTCGGCATTGAGAACATCCACGTCCAGCGTGCC
AGTCTGCAAAAGGTGCTTGAGGCCTGCGAACAGAAGTCGCCCACGATGAG
CGCCTTCATAAATGCCCTGGAGTCATCCGGCTGGCTGAAGCACATTCGCT
CCATATTGGACACGTCGAGCTTCATCGCCAACGCCGTGGACAAGGGCGTC
TCGGTGGTGGTCCACTGCTCCGACGGCTGGGACCGCACGGCCCAGGTCTG
TTCACTGGCGCAGCTGATGCTGAACCCCTACTACCGAACCATCAAGGGCT
TCCAGGCGCTAATCGAGAAGGACTGGCTGGCATTCGGGCACAAGTTCAGC
GAGCGCTGCGGTCACATCCAGACGGATGCCCGCGAGGTGTCGCCGATCTT
CACACAGTTCCTGGACTGTACCTGGCAGCTAATGTCGCAGCGCAGCGAGG
CCTTCGAGTTCAACGAGCGGTTCCTGCTCATCCTGCACGACCATGTGCAC
TCATGTCAATTCGGCACCTTCGTGGGCAACTGCGAGAAGGATCGCTTGGA
CCTAAAGCTGGCCGAGCGCACCTTCTCGCTGTGGGGCTATATGGCCAATC
ACCTGAACGAGTATATCAACCCGCTGTACAAACCAAATGTAGACGAGGCC
ATTAAGGCCAACCTGGCACCGCAGTGCATCAAGTTCTGGCGCGGCATGTA
CAGTCGCTTCGAGAGCGGCATTCATCCGCGGGAGCCACTGGGCGACGTGC
TGCTCGATAGCAAGGAGCACTGCAACTCGCTGGAGGACCACGTGCAGCAT
CTGACCAAGCGCATAGCCAGCTTCAAGAACTACATTTCCAAGTCGGCCAA
GAAACTGCAAGACGCCACCAGCGCCCCTGGCAAAGTGAACAAGGAGCTCT
CCAGCAACGAGATCAATGACAACAAATACAACTACGATAAGAAGCTTAGC
GAACTGTCTGCCGCCGACGACGATCATCCGCTGAAGGCCAGCAACATGTC
CTTCGCCAGTCTGTCGCTGAGCGCGGAACAATCCAGTCCGCCGCAGGCGC
TGCCCGAGGAGATCAACTCCGTGGCCGTAGACTGGAAGCCCATGCGCAAC
GTAACCACCTGCTCCTGCTCCACGCCCTTCGATCAGTTCAGCAAAAAGAC
TCACTGCTGGCGCTGCGGGGACATCTTCTGCGAGCGCTGCATAGACAAGA
ACGTGGCTCTGCCAGGACACGACAGTGGAAAGCCGGTGCCGGTGTGCCGG
GGCTGCTTCCGGCAAATGCAAAAGCAAAGCCCGTAGAAGCTTTCTAGACC
AT
BS19789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RA | 2286 | CG3530-PA | 365..2286 | 15..1936 | 9610 | 100 | Plus |
| CG3530-RB | 2070 | CG3530-PB | 149..2070 | 15..1936 | 9610 | 100 | Plus |
| CG3530-RC | 1920 | CG3530-PC | 1..1920 | 17..1936 | 9600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RC | 3193 | CG3530-RC | 760..2682 | 15..1937 | 9615 | 100 | Plus |
| CG3530-RA | 3063 | CG3530-RA | 630..2552 | 15..1937 | 9615 | 100 | Plus |
| CG3530-RB | 2810 | CG3530-RB | 377..2299 | 15..1937 | 9615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23390303..23390819 | 1334..818 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 23391389..23391674 | 455..170 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 23390006..23390248 | 1575..1333 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 23390895..23391125 | 819..589 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 23389719..23389941 | 1798..1576 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 23391741..23391896 | 170..15 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 23389520..23389660 | 1937..1797 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 23391192..23391328 | 589..453 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:52:21 has no hits.
BS19789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:30 Download gff for
BS19789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RC | 744..2663 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:55 Download gff for
BS19789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 379..2298 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:25 Download gff for
BS19789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 379..2298 | 17..1936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:25 Download gff for
BS19789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23389719..23389941 | 1576..1798 | 100 | <- | Minus |
| 2R | 23390895..23391124 | 590..819 | 100 | <- | Minus |
| 2R | 23390006..23390248 | 1333..1575 | 100 | <- | Minus |
| 2R | 23391192..23391326 | 455..589 | 100 | <- | Minus |
| 2R | 23390305..23390817 | 820..1332 | 100 | <- | Minus |
| 2R | 23389521..23389658 | 1799..1936 | 100 | <- | Minus |
| 2R | 23391390..23391673 | 171..454 | 100 | <- | Minus |
| 2R | 23391741..23391894 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:55 Download gff for
BS19789.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19277044..19277181 | 1799..1936 | 100 | <- | Minus |
| arm_2R | 19277242..19277464 | 1576..1798 | 100 | <- | Minus |
| arm_2R | 19277529..19277771 | 1333..1575 | 100 | <- | Minus |
| arm_2R | 19277828..19278340 | 820..1332 | 100 | <- | Minus |
| arm_2R | 19278418..19278647 | 590..819 | 100 | <- | Minus |
| arm_2R | 19278715..19278849 | 455..589 | 100 | <- | Minus |
| arm_2R | 19278913..19279196 | 171..454 | 100 | <- | Minus |
| arm_2R | 19279264..19279417 | 17..170 | 100 | | Minus |
BS19789.pep Sequence
Translation from 16 to 1935
> BS19789.pep
MHVASIEKLPLSTTGSPLLIRCKTFLSVTFVIPKDSECHDVYTSLLKLFQ
PVSINKLYCFNYQPNKDDFPKNAGWDYFKLEAEFKHMLVPNEAWTLCSMN
EKYELCDTYPRQIYVPKEATTLMLISSSRFRSKGRLPVLTYLHNNKASIC
RCSQPLSGFSARCLEDEQMLEAIRKTNSNTDYMYVVDTRPRINAMANRAA
GKGYENEAFYENIKFHFLGIENIHVQRASLQKVLEACEQKSPTMSAFINA
LESSGWLKHIRSILDTSSFIANAVDKGVSVVVHCSDGWDRTAQVCSLAQL
MLNPYYRTIKGFQALIEKDWLAFGHKFSERCGHIQTDAREVSPIFTQFLD
CTWQLMSQRSEAFEFNERFLLILHDHVHSCQFGTFVGNCEKDRLDLKLAE
RTFSLWGYMANHLNEYINPLYKPNVDEAIKANLAPQCIKFWRGMYSRFES
GIHPREPLGDVLLDSKEHCNSLEDHVQHLTKRIASFKNYISKSAKKLQDA
TSAPGKVNKELSSNEINDNKYNYDKKLSELSAADDDHPLKASNMSFASLS
LSAEQSSPPQALPEEINSVAVDWKPMRNVTTCSCSTPFDQFSKKTHCWRC
GDIFCERCIDKNVALPGHDSGKPVPVCRGCFRQMQKQSP*
BS19789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-PC | 639 | CG3530-PC | 1..639 | 1..639 | 3428 | 100 | Plus |
| CG3530-PA | 761 | CG3530-PA | 123..761 | 1..639 | 3428 | 100 | Plus |
| CG3530-PB | 689 | CG3530-PB | 51..689 | 1..639 | 3428 | 100 | Plus |
| mtm-PB | 619 | CG9115-PB | 106..570 | 3..452 | 857 | 40.3 | Plus |
| mtm-PA | 619 | CG9115-PA | 106..570 | 3..452 | 857 | 40.3 | Plus |
