BS19791.complete Sequence
2324 bp assembled on 2011-01-28
GenBank Submission: KX800489
> BS19791.complete
GAAGTTATCAGTCGACATGGGGCAATCGCTGCCGCTGCTCATCCGCCTCA
TCGTTGTGATCTGGCTGACAATTAGTATGGTCACCGCATGTCCCCGGGCG
CCCACCCACTTGAACCACGGTCGACGCACACGCGGCGACAATGGATACAA
ATTAATTGTGGCCGATGGACCCAACGGCTATGTGCCCGGCAAGACGTATA
ATTTACTTCTACTTGGATCCCGGACTCACTTGAAAGTTCAGCATTTCACC
CACTTTACCATTACTGCGGAGGCACACACTGGCGCCCGTCGTCCACAGGC
AGCTAGTCCCCGGCGAGTGGGCCGCTTCCAGCTGTTTAGTGACTCCCTGA
CCCAGTTCAACGACAGATGCGTGAACACGGTTTCCGAGGCGGACGACCTG
CCCAAAACAGAAGTCCAGGTAATGTGGGTGGCTCCGGAGTCGGGTTCTGG
CTGTGTCTCTTTGTCAGCAATGGTCTACGAGGGTCCGAGAGCCTGGTTCG
CCGACGATGGCAACCTATCCACTGTGATTTGCGAACGAAAGCCTGATGCA
GCTGCTGCTCAAAAGGAATGCTGCGCCTGCGATGAAGCCAAATACAGCTT
CGTTTTCGAGGGAATCTGGTCAAACGAAACCCATCCCAAGGATTATCCGT
TCGCCATCTGGTTAACACACTTCTCTGACGTGATTGGTGCTTCGCACGAG
TCCAACTTCTCCTTCTGGGGCGAGAACCACATAGCCACCGCCGGATTCCG
CTCTCTGGCGGAGTGGGGTTCTCCGGCTGCTCTAGAAACGGAGCTGCGCG
CGAACGGGCCCAAGTTGCGCACCCTGATTAAGGCCGCTGGGTTGTGGTAC
CCGAATGTCAACCAGAACACCTCATCCAAGTTCCGGGTGGATCGCAAGCA
CCCTAAGGTATCGCTGGTGTCCATGTTTGGTCCTTCTCCCGATTGGGTGG
TGGGCATTAGTGGTCTGGATCTCTGCACTGAGGATTGCAGCTGGAAGGAG
TCAATGGACTTTGATTTGTTTCCATGGGATGCGGGCACTGATAGCGGCAT
CTCTTATATGTCACCCAACTCGGAGACACAACCTCCGGAAAGGATGTATC
GCATCACTACAATGTATCCTGAGGATCCTAGGGCTCCCTTTTATAATCCC
AAGAGCCGTGAGATGACACCACTTGCCAAGCTATACCTAAGACGTGAGAA
GATTGTCTCCCGGAACTGCGACGATGAGTTCCTGCAGGCTCTTCAGTTGG
AGGTGTCCGACGATGCTGAGGAGCAGGACACCAGAGCCGAATGTCGAGTG
GGCGACTACTCCGCCTGGAGTCCGTGTTCCGTGAGCTGCGGCAAGGGAAT
CCGCATGCGCAGCAGGCAATATCTGTATCCCGCGGCGGCGGATCAGAACA
AATGCGCTCGCCAACTGGTGGCCAAGGAAATGTGCGTGGCTGCCATACCC
GAATGTGCCGATGGCCCAGCCCAGTCCAAGGATCGTGACGATGATGAGGG
CGAGAACCTGGCCAACTCGCAGTCCCTGGTGGGCAGCAATGGCGAGGGAG
CCGGTCTCTGCAAAACTTCTCCCTGGAGCGTGTGGTCCGAGTGTTCGGCC
AGCTGTGGCATTGGCATTACCATGCGCACGCGCACCTTTGTCAATCATTT
GGGACGCAAGCGATGTCCCCATATCACCATAGTGGAAAAGAACAAGTGCA
TGCGGCCGGACTGTACATACGAGCAGGTGGAGCTTCCTGATCCGCAATGT
CCCACCAGCCAGTGGAGCGACTGGAGTCCGTGCTCCTCGACCTGCGGCCG
GGGAGTTACCATTCGGACTCGGCTGCTTCTGTTGGAGAATGGACCCGATA
AGGAGAGCTGTACGCAACGCATGGAGCTGCATCAGCAAAAGGAGTGCGTC
AATCCCATTGACTGCCACATTAACGCGGAGCAGGCCAAGGACATCTGTGT
ACAGGCACCGGACCCAGGTCCCTGTCGTGGCACCTATATGCGGTATGCCT
ACGATCCGCAGAACCAGCATTGCTACTCCTTTACCTACGGAGGATGCCGT
GGCAACCGAAACAACTTCCTCACGGAGAACGACTGCCTGAATACGTGCAA
TGTGCTTAGGTCGCCGTATTCCTCAAGAGTGGATCAGCCCAGGGCCTGCG
TCCTGTCAGATTGGTCCGTCTGGTCGCCCTGCAGCGTTAGCTGTGGTGTC
GGAGTCTCTGAAAGCCGGCGCTACGTTGTCACCGAGCCCCAGAATGGTGG
ACAGCCGTGCTCCAAGCGCCTGGTCAAATCACGCTCTTGCGCCATGCCGG
CTTGCTAAAAGCTTTCTAGACCAT
BS19791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fat-spondin-RA | 2292 | CG6953-PA | 1..2292 | 17..2308 | 11460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fat-spondin-RA | 2475 | CG6953-RA | 98..2389 | 17..2308 | 11460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17058190..17059213 | 1285..2308 | 5120 | 100 | Plus |
| 2R | 25286936 | 2R | 17057389..17057850 | 599..1060 | 2310 | 100 | Plus |
| 2R | 25286936 | 2R | 17056934..17057328 | 204..598 | 1975 | 100 | Plus |
| 2R | 25286936 | 2R | 17057912..17058138 | 1060..1286 | 1135 | 100 | Plus |
| 2R | 25286936 | 2R | 17054099..17054285 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:59 has no hits.
BS19791.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:47 Download gff for
BS19791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fat-spondin-RA | 97..2386 | 17..2306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:18 Download gff for
BS19791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fat-spondin-RA | 98..2387 | 17..2306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:52 Download gff for
BS19791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fat-spondin-RA | 98..2387 | 17..2306 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:52 Download gff for
BS19791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17054099..17054285 | 17..203 | 100 | -> | Plus |
| 2R | 17056934..17057328 | 204..598 | 100 | -> | Plus |
| 2R | 17057389..17057850 | 599..1060 | 100 | -> | Plus |
| 2R | 17057913..17058138 | 1061..1286 | 100 | -> | Plus |
| 2R | 17058192..17059211 | 1287..2306 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:18 Download gff for
BS19791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12941604..12941790 | 17..203 | 100 | -> | Plus |
| arm_2R | 12944439..12944833 | 204..598 | 100 | -> | Plus |
| arm_2R | 12944894..12945355 | 599..1060 | 100 | -> | Plus |
| arm_2R | 12945418..12945643 | 1061..1286 | 100 | -> | Plus |
| arm_2R | 12945697..12946716 | 1287..2306 | 100 | | Plus |
BS19791.pep Sequence
Translation from 16 to 2307
> BS19791.pep
MGQSLPLLIRLIVVIWLTISMVTACPRAPTHLNHGRRTRGDNGYKLIVAD
GPNGYVPGKTYNLLLLGSRTHLKVQHFTHFTITAEAHTGARRPQAASPRR
VGRFQLFSDSLTQFNDRCVNTVSEADDLPKTEVQVMWVAPESGSGCVSLS
AMVYEGPRAWFADDGNLSTVICERKPDAAAAQKECCACDEAKYSFVFEGI
WSNETHPKDYPFAIWLTHFSDVIGASHESNFSFWGENHIATAGFRSLAEW
GSPAALETELRANGPKLRTLIKAAGLWYPNVNQNTSSKFRVDRKHPKVSL
VSMFGPSPDWVVGISGLDLCTEDCSWKESMDFDLFPWDAGTDSGISYMSP
NSETQPPERMYRITTMYPEDPRAPFYNPKSREMTPLAKLYLRREKIVSRN
CDDEFLQALQLEVSDDAEEQDTRAECRVGDYSAWSPCSVSCGKGIRMRSR
QYLYPAAADQNKCARQLVAKEMCVAAIPECADGPAQSKDRDDDEGENLAN
SQSLVGSNGEGAGLCKTSPWSVWSECSASCGIGITMRTRTFVNHLGRKRC
PHITIVEKNKCMRPDCTYEQVELPDPQCPTSQWSDWSPCSSTCGRGVTIR
TRLLLLENGPDKESCTQRMELHQQKECVNPIDCHINAEQAKDICVQAPDP
GPCRGTYMRYAYDPQNQHCYSFTYGGCRGNRNNFLTENDCLNTCNVLRSP
YSSRVDQPRACVLSDWSVWSPCSVSCGVGVSESRRYVVTEPQNGGQPCSK
RLVKSRSCAMPAC*
BS19791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fat-spondin-PA | 763 | CG6953-PA | 1..763 | 1..763 | 4181 | 100 | Plus |
| CG17739-PA | 873 | CG17739-PA | 5..779 | 3..758 | 1139 | 34.1 | Plus |
| CG30046-PC | 839 | CG30046-PC | 9..561 | 8..566 | 881 | 34.1 | Plus |
| CG30046-PB | 839 | CG30046-PB | 9..561 | 8..566 | 881 | 34.1 | Plus |
| CG30203-PB | 924 | CG30203-PB | 1..541 | 7..566 | 862 | 35.1 | Plus |
| CG30046-PC | 839 | CG30046-PC | 421..593 | 515..665 | 182 | 30.9 | Plus |
| CG30046-PB | 839 | CG30046-PB | 421..593 | 515..665 | 182 | 30.9 | Plus |
