BS19793.complete Sequence
1442 bp assembled on 2011-01-04
GenBank Submission: KX804713
> BS19793.complete
GAAGTTATCAGTCGACATGGCCGAAAAGGTGGAACTACTGGCCCAGGCCA
GCATGAATGGCCAACAGAATGATACGCGGAAGGTGCGCAAATCACCGGAA
TTTCAGCCCGGCGTTATCTCCCGCGAACGCAGCTTTGTGCGCACCTCAAA
TCAACAGAATATCAACAAACGGCGAAGTCTGGCTTTCAACGTACCTGGCA
ATCAGACGGGACAGATGAGGGGCAAACCAGCCATGGATATCTACAGGCCT
CCCAAGCTAAACTACAGTCTACAACATTCTTCCAGTTCGTCGCTAATACT
TCCGCTCACCAATGGACCCGGAGTGGGAGTTGCACCGGGTTTGGGTCCGT
ACGGAAACGTGAATCGCCGCCAGGCCGGACACTCCCTCGGCAACATGCCG
GGCTTGAAGGCCAACCACCGGTCGATCCTGGTGACGTATCCAATCAATAC
CGGTGCCCTCAGCGGTCAGCTGCCGCTAATGAACTCGCCATCCAGTGGAA
ATATACTTCACACAACAAATCGTGTAAAGTTTGCACCTGAGCCCCGAGGT
CACAAAGTGGCTTCGCATAATCAGTTTGGTCAACTAAACAACAACTATGC
TCAGCCTTATCAGGCGAATATTAATGGAGTAGATCCTTACATGAATGGAA
ATGCACTGCAACGCTCCAAGTCGTTGTCGTCGGCGGATGCCCTTACTCGT
GGAATGGCCGGATTGGGACTAGGTTTGGGCAACGAGGTGGCCGACATAGG
ACAGTTCACGCCAGAGATCCAGGCGCTTATTGACACGGCCCTGGAGGATC
CCAATAAACTGAACTCTCGCTGTCTCATGGAACTGACATCGCAGTTCATC
AAACGCGCGGTGGAGAGTCGCCGTTTTGCTCTGCCAATATCACGACTGTG
TCTGAACATCATTGCCCGGGAGCAGAAGGAAACGTTTCTCGAGGCGCTCC
TCAACACATGCCGTCAGTGGTACCAGGAGCGTGAGAAGCTGTTGTTTGCC
ATCCAGGGCATGAAGTCGCCATCACGTGTCCGATTCACTGCCTTTATGGC
CTTCCTTACGGAAATGTTTTGTCAGCTGAAACGTCGGCAGCTCCAGCTAC
GCACCCACCACGAGGGCACTCCTCCGCCACTGGTACTGCTTAGTCTGCTC
TCCAAATGTTGCGGGGATTGCGTGCGTCCACCCATTAGATCACTTTCAGA
GATTGAGTGCTTGTTTTATGTTTTGACCTGTATTGGCCAGGACATGGAGC
AGCAGTTGCCCCAGCAACTGGAGTTACTCATGAGTCTGGTTCGCGATGCC
TTTTTGAATGCCGGCGAATCTGCGGCCTCCATTCGGCGCACTCTTCTCCA
ACTCATCGAGCTGAAGGCCTCCCACTGGCAGCTACCAGGCAATACGGTTC
TTTACTACACGCACACTAACAATTAGAAGCTTTCTAGACCAT
BS19793.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13124-RJ | 1410 | CG13124-PJ | 1..1410 | 17..1426 | 7050 | 100 | Plus |
| CG13124-RI | 1410 | CG13124-PI | 1..1410 | 17..1426 | 7050 | 100 | Plus |
| CG13124-RD | 1410 | CG13124-PD | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13124-RJ | 3114 | CG13124-RJ | 1267..2676 | 17..1426 | 7050 | 100 | Plus |
| CG13124-RI | 2854 | CG13124-RI | 1107..2516 | 17..1426 | 7050 | 100 | Plus |
| CG13124-RD | 2893 | CG13124-RD | 1153..2562 | 17..1426 | 7050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9904282..9904758 | 988..512 | 2385 | 100 | Minus |
| 2L | 23513712 | 2L | 9904827..9905083 | 511..255 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 9903717..9903943 | 1426..1200 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 9904004..9904218 | 1201..987 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 9906033..9906173 | 157..17 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 9905875..9905974 | 254..155 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:34 has no hits.
BS19793.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:59 Download gff for
BS19793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RJ | 1283..2692 | 17..1426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:06 Download gff for
BS19793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RD | 1153..2562 | 17..1426 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:02 Download gff for
BS19793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13124-RD | 1153..2562 | 17..1426 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:02 Download gff for
BS19793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9903717..9903941 | 1202..1426 | 100 | <- | Minus |
| 2L | 9904004..9904216 | 989..1201 | 100 | <- | Minus |
| 2L | 9904282..9904758 | 512..988 | 100 | <- | Minus |
| 2L | 9904827..9905083 | 255..511 | 100 | <- | Minus |
| 2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
| 2L | 9906033..9906173 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:06 Download gff for
BS19793.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9903717..9903941 | 1202..1426 | 100 | <- | Minus |
| arm_2L | 9904004..9904216 | 989..1201 | 100 | <- | Minus |
| arm_2L | 9904282..9904758 | 512..988 | 100 | <- | Minus |
| arm_2L | 9904827..9905083 | 255..511 | 100 | <- | Minus |
| arm_2L | 9905875..9905971 | 158..254 | 100 | <- | Minus |
| arm_2L | 9906033..9906173 | 17..157 | 100 | | Minus |
BS19793.pep Sequence
Translation from 16 to 1425
> BS19793.pep
MAEKVELLAQASMNGQQNDTRKVRKSPEFQPGVISRERSFVRTSNQQNIN
KRRSLAFNVPGNQTGQMRGKPAMDIYRPPKLNYSLQHSSSSSLILPLTNG
PGVGVAPGLGPYGNVNRRQAGHSLGNMPGLKANHRSILVTYPINTGALSG
QLPLMNSPSSGNILHTTNRVKFAPEPRGHKVASHNQFGQLNNNYAQPYQA
NINGVDPYMNGNALQRSKSLSSADALTRGMAGLGLGLGNEVADIGQFTPE
IQALIDTALEDPNKLNSRCLMELTSQFIKRAVESRRFALPISRLCLNIIA
REQKETFLEALLNTCRQWYQEREKLLFAIQGMKSPSRVRFTAFMAFLTEM
FCQLKRRQLQLRTHHEGTPPPLVLLSLLSKCCGDCVRPPIRSLSEIECLF
YVLTCIGQDMEQQLPQQLELLMSLVRDAFLNAGESAASIRRTLLQLIELK
ASHWQLPGNTVLYYTHTNN*
BS19793.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13124-PJ | 469 | CG13124-PJ | 1..469 | 1..469 | 2426 | 100 | Plus |
| CG13124-PI | 469 | CG13124-PI | 1..469 | 1..469 | 2426 | 100 | Plus |
| CG13124-PD | 469 | CG13124-PD | 1..469 | 1..469 | 2426 | 100 | Plus |
| CG13124-PH | 510 | CG13124-PH | 1..510 | 1..469 | 2327 | 90.6 | Plus |
| CG13124-PG | 510 | CG13124-PG | 1..510 | 1..469 | 2327 | 90.6 | Plus |
