BS19794.complete Sequence
1220 bp assembled on 2011-01-04
GenBank Submission: KX800847
> BS19794.complete
GAAGTTATCAGTCGACATGAACTCGATGTGGTGGCCGCCAAATAAATCAT
TCGCCGGATTCGCCCACCAGGCCCTCTTCCTGCTCCTTTCCACGCTGGCC
ACATTCAATTACGTCATGGCCACTTTGACTGGTCCCGGACTGATGCCAAA
ACAGTGGCATCCCAAGGATCCCAAGGACGCCCAGTTCCTGCAGTACTGCA
AAAAGTGCGAGGGCTACAAGGCACCACGCTCCCATCATTGTCGCAAGTGT
GATCGCTGCGTCAAGAAGATGGACCATCACTGCCCATGGATCAATCACTG
CGTTGGCTGGGCCAACCACGCGTACTTCACATACTTCCTGCTCTTCTCCA
TCCTGGGCAGCCTGCAGGGCACCGTGGTGCTGTGCTGCTCCTTCTGGCGG
GGAATCTACCGCTACTACTATCTCACCCACGGATTGGCGCACTTGGCTAG
CGTGCAGTTCACTCTGCTCAGCATCATCATGTGCATTCTGGGCATGGGCC
TGGCCATCGGTGTCGTCATTGGCCTGAGCATGCTGCTGTTCATTCAGCTG
AAGACGATTGTAAACAACCAGACGGGCATAGAGATCTGGATAGTGGAGAA
GGCCATTTACCGCCGATATAGGAATGCCGACTGCGACGACGAGTTCCTAT
ATCCCTATGATTTGGGCTGGCGGGCAAATTTGCGACTGGTATTCAATGAC
GAGTGCCAAAAGCGAGGCGATGGCATCGAGTGGCCAGTGGTGGAGGGTTG
TGATCAGTATACATTGACGCGCGAGCAACTGGCGCAGAAGGAGGAGAAAC
GAGCTCGAACCCGCACCTTCAAATGCACAAGGCCAGTGACTGGCCGTTGG
CTGCCGATCTTTTCGCAGGGTTGGCGTGTTTGTGTGGCCGCTCCCTGCTC
CGATGAGCCACGCATCAGCCTGCGACCCAACGACATGATTAAGGTCACTC
GCTTCCGCAACCACTGGCTGTTCGGCGAGCGAGTGCTTTCCGAGCAAGAG
CTAGCTGGCGTCAAGAAGCGCCAACGCAAGGGTCCCATTCGTGGCTGGTT
CCCACGACGCAGCGCCGTAGAGGTCATTGAGGCGGTCCATGAAGGCAGCG
GCGATGGCAACAGCGAGACACCAGCACCTGCGGCCCAGAATGGCAACGCC
CACAGCCACTTGAAGCAGCAGCAGCGAAACGGACATGCCAAAAAGTACAT
GTAGAAGCTTTCTAGACCAT
BS19794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RB | 1188 | CG5196-PB | 1..1188 | 17..1204 | 5925 | 99.9 | Plus |
| CG5196-RA | 1284 | CG5196-PA | 97..1284 | 17..1204 | 5925 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-RB | 2023 | CG5196-RB | 537..1724 | 17..1204 | 5925 | 99.9 | Plus |
| CG5196-RA | 1679 | CG5196-RA | 193..1380 | 17..1204 | 5925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12410460..12410980 | 249..769 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 12411034..12411469 | 769..1204 | 2165 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12409290..12409440 | 17..167 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 12410273..12410358 | 165..250 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:51:50 has no hits.
BS19794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:57 Download gff for
BS19794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RB | 537..1724 | 17..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:01 Download gff for
BS19794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 193..1380 | 17..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:48 Download gff for
BS19794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5196-RA | 193..1380 | 17..1204 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:48 Download gff for
BS19794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12409290..12409439 | 17..166 | 100 | -> | Plus |
| 3R | 12410275..12410356 | 167..248 | 100 | -> | Plus |
| 3R | 12410460..12410980 | 249..769 | 100 | -> | Plus |
| 3R | 12411035..12411469 | 770..1204 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:01 Download gff for
BS19794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8235012..8235161 | 17..166 | 100 | -> | Plus |
| arm_3R | 8235997..8236078 | 167..248 | 100 | -> | Plus |
| arm_3R | 8236182..8236702 | 249..769 | 100 | -> | Plus |
| arm_3R | 8236757..8237191 | 770..1204 | 99 | | Plus |
BS19794.pep Sequence
Translation from 16 to 1203
> BS19794.pep
MNSMWWPPNKSFAGFAHQALFLLLSTLATFNYVMATLTGPGLMPKQWHPK
DPKDAQFLQYCKKCEGYKAPRSHHCRKCDRCVKKMDHHCPWINHCVGWAN
HAYFTYFLLFSILGSLQGTVVLCCSFWRGIYRYYYLTHGLAHLASVQFTL
LSIIMCILGMGLAIGVVIGLSMLLFIQLKTIVNNQTGIEIWIVEKAIYRR
YRNADCDDEFLYPYDLGWRANLRLVFNDECQKRGDGIEWPVVEGCDQYTL
TREQLAQKEEKRARTRTFKCTRPVTGRWLPIFSQGWRVCVAAPCSDEPRI
SLRPNDMIKVTRFRNHWLFGERVLSEQELAGVKKRQRKGPIRGWFPRRSA
VEVIEAVHEGSGDGNSETPAPAAQNGNAHSHLKQQQRNGHAKKYM*
BS19794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5196-PB | 395 | CG5196-PB | 1..395 | 1..395 | 2184 | 100 | Plus |
| CG5196-PA | 427 | CG5196-PA | 33..427 | 1..395 | 2184 | 100 | Plus |
| CG4483-PA | 435 | CG4483-PA | 34..383 | 1..355 | 990 | 49 | Plus |
| CG8314-PA | 293 | CG8314-PA | 63..273 | 7..218 | 241 | 27.5 | Plus |
| CG5880-PA | 381 | CG5880-PA | 89..213 | 5..139 | 235 | 37.2 | Plus |
