BS19813.complete Sequence
1253 bp assembled on 2011-01-04
GenBank Submission: KX800575
> BS19813.complete
GAAGTTATCAGTCGACATGATATTACTAAATTGCCTAGTAATATGCCTGT
GCATATTTTCCTGTGGTGCCCAGGACTCTTCCTTGGACAAATTGATATCG
GACATCTTTAAAACGGACGAAACACCCAAACCATCATCCCCTCCCCCGCC
AGTGGTGAACCCCAAGGATTCGTCCGGTAGCACGGGATCCGAAAACGGAG
GATCCAGTTCAACGCAGTACCAGTCCTGTGGCGATCAAAAGGAGTGTGTT
CCTCGCTGGTTGTGCGCCAATGATACGATTAACACCAGTGGCGATGGTAT
CATTGACATTCGACTTGGTACGGACGCCGAATGCAAGAACTATTTGGATC
TTTGCTGTGATCTGCCCAACAAGAGAAAAGATCCGATTTTCGAGTTTAAG
CCTGATCATCCCGAGGGCTGCGGTTACCAAAATCCCAACGGCGTTGGCTT
TAAGATCACTGGAGCTGTCAACCAGGAGGCCGAATTCGGCGAATTCCCCT
GGATGCTGGCCATTCTACGGGAAGAAGGCAACCTTAACCTGTACGAGTGT
GGAGGAGCATTGATAGCTCCCAATGTGGTTCTGACCGCGGCGCATTGCGT
TCACAACAAACAGCCCAGTAGCATTGTTGTGAGAGCTGGCGAATGGGATA
CGCAAACGCAGACTGAGATCAGAAGGCACGAAGACCGATATGTCAAGGAA
ATAATCTACCATGAGCAGTTCAACAAGGGATCGCTCTATAACGATGTGGC
TGTCATGCTGTTGGAAAGTCCATTCACCCTCCAGGAGAACATTCAGACCG
TTTGCCTGCCCAATGTGGGTGATAAATTCGATTTCGATCGCTGCTATGCC
ACCGGCTGGGGCAAGAACAAGTTCGGCAAGGATGGGGAATATCAGGTTAT
CCTGAAGAAGGTCGACATGCCCGTGGTGCCCGAGCAGCAGTGCGAGACGA
ATCTGCGCGAAACTCGACTCGGCAGGCATTTCATTCTGCACGACAGCTTC
ATTTGCGCCGGCGGTGAGAAGGACAAGGACACCTGCAAGGGTGATGGTGG
CTCCCCACTGGTGTGTCCAATTGCTGGCCAGAAGAACCGCTTCAAGTCCG
CCGGCATTGTTGCCTGGGGCATCGGATGCGGCGAGGTGAACATTCCCGGA
GTGTACGCCAGCGTGGCCAAGCTTCGTCCGTGGATCGACGCCAAGTTGAA
GATTTGGAGTATTGACCCCAGGCACTATACACCCTAAAAGCTTTCTAGAC
CAT
BS19813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5390-RB | 1221 | CG5390-PB | 1..1221 | 17..1237 | 6060 | 99.8 | Plus |
| CG5390-RA | 1221 | CG5390-PA | 1..1221 | 17..1237 | 6060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5390-RB | 1372 | CG5390-RB | 59..1283 | 17..1241 | 6065 | 99.7 | Plus |
| CG5390-RA | 1401 | CG5390-RA | 88..1312 | 17..1241 | 6065 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10304158..10304770 | 1241..629 | 3050 | 99.8 | Minus |
| 2L | 23513712 | 2L | 10305149..10305505 | 373..17 | 1770 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10304827..10305085 | 629..371 | 1265 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:16:46 has no hits.
BS19813.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:56:01 Download gff for
BS19813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 88..1306 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:14 Download gff for
BS19813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 88..1306 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:09 Download gff for
BS19813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5390-RA | 88..1306 | 17..1235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:09 Download gff for
BS19813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10304164..10304769 | 630..1235 | 100 | <- | Minus |
| 2L | 10304827..10305082 | 374..629 | 99 | <- | Minus |
| 2L | 10305149..10305505 | 17..373 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:14 Download gff for
BS19813.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10304164..10304769 | 630..1235 | 100 | <- | Minus |
| arm_2L | 10304827..10305082 | 374..629 | 99 | <- | Minus |
| arm_2L | 10305149..10305505 | 17..373 | 99 | | Minus |
BS19813.pep Sequence
Translation from 16 to 1236
> BS19813.pep
MILLNCLVICLCIFSCGAQDSSLDKLISDIFKTDETPKPSSPPPPVVNPK
DSSGSTGSENGGSSSTQYQSCGDQKECVPRWLCANDTINTSGDGIIDIRL
GTDAECKNYLDLCCDLPNKRKDPIFEFKPDHPEGCGYQNPNGVGFKITGA
VNQEAEFGEFPWMLAILREEGNLNLYECGGALIAPNVVLTAAHCVHNKQP
SSIVVRAGEWDTQTQTEIRRHEDRYVKEIIYHEQFNKGSLYNDVAVMLLE
SPFTLQENIQTVCLPNVGDKFDFDRCYATGWGKNKFGKDGEYQVILKKVD
MPVVPEQQCETNLRETRLGRHFILHDSFICAGGEKDKDTCKGDGGSPLVC
PIAGQKNRFKSAGIVAWGIGCGEVNIPGVYASVAKLRPWIDAKLKIWSID
PRHYTP*
BS19813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5390-PB | 406 | CG5390-PB | 1..406 | 1..406 | 2226 | 100 | Plus |
| CG5390-PA | 406 | CG5390-PA | 1..406 | 1..406 | 2226 | 100 | Plus |
| CG40160-PH | 421 | CG40160-PH | 7..409 | 5..394 | 742 | 39.8 | Plus |
| CG40160-PG | 421 | CG40160-PG | 7..409 | 5..394 | 742 | 39.8 | Plus |
| CG40160-PF | 421 | CG40160-PF | 7..409 | 5..394 | 742 | 39.8 | Plus |
