Clone BS19845 Report

Search the DGRC for BS19845

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:198
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG6836-RA
Protein status:BS19845.pep: full length peptide match
Sequenced Size:1019

Clone Sequence Records

BS19845.complete Sequence

1019 bp assembled on 2011-01-04

GenBank Submission: KX800394

> BS19845.complete
GAAGTTATCAGTCGACATGAATGCCAGTGAGAACTATTTCACGATGGACC
CCACAGAGAATATATCCCAGGTCTTAGACCAGAACAGAAACAACACAAAT
AGCCTGCGAACACATCCCACTGTGGAAGAGTATTATGAGAACATGACCGC
CTTCCTCAGCCTGGCCATCTTCATAGCCAGCCTGCTGACCATCCTCAACA
TCAGCATCTTCGCAACGACAGTCTCTCGGCTGCGTCGTCACCTGGACAAG
CCGCTGCTGGGTCCCTCGATTATGATGGTGGGCCTGTATCCGATTATCTC
GGTGGCTGCCCTGGTTACCATTCTGGTGCCGTACTCCTGGTTCATCTGCC
ATACGGTGATGCACGTTATGTTTATGGTCGGCGGACCTGTCTTCCGCACC
CTGCTCTTTCGTTACGTGGGCTCGGAGCAGAATTACGTGAAGGAGACGGC
CGGCGAGGCGGTGCAACTAAATACTCCTCCGTGCTGTTGCTGCTGCCTCT
GCCTGCCGATGGTGATTCCCACCAAGGCGAAACTCTGCATCTCCAGATAC
ATGGTATGGCAAATGCCCTTCTGGCAGGGCTCCATTATGCTGGTGATGAA
CATCCTATACTACCGGGACATTCAGCTCTACCGGCAGGTCATGTTCTTCT
TCATCCCCTTCATCGTCTGCTCCATTGTCTTGGGCGCTTGGTCCCTCCAA
ATCACTGTGCGGATGATCACGAAGGTGCGCGGGGACTATCAGCTGAGAAA
GAAGATGTTCTGCCTCCAACTGGTGGTGATGCTTTGCAAACTGCAGTACC
TGGTACTCTATGATCAGCTGGACGGCATCAAAATGGGTGGGGAGTATCCC
ATTAATCACACCGTCTACAAGCAAACTATCATCAACATCCTTATCCTGGT
TGAAATGGTTCTCGTATCCATGATGGTTCAAAGTGCATATCGTACTCCCG
TTCAGGTGCAAATCGATGAGGTTAACAAGGAAAAGGAAGTTACTCGCATT
TGAAAGCTTTCTAGACCAT

BS19845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6836-RA 987 CG6836-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6836-RA 1309 CG6836-RA 252..1238 17..1003 4935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18954254..18954671 141..558 2090 100 Plus
3L 28110227 3L 18954924..18955115 684..875 960 100 Plus
3L 28110227 3L 18954728..18954859 553..684 660 100 Plus
3L 28110227 3L 18955208..18955335 876..1003 640 100 Plus
3L 28110227 3L 18953763..18953886 17..140 620 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:17:13 has no hits.

BS19845.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:56:03 Download gff for BS19845.complete
Subject Subject Range Query Range Percent Splice Strand
CG6836-RA 249..1234 17..1002 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:20 Download gff for BS19845.complete
Subject Subject Range Query Range Percent Splice Strand
CG6836-RA 252..1237 17..1002 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:16 Download gff for BS19845.complete
Subject Subject Range Query Range Percent Splice Strand
CG6836-RA 252..1237 17..1002 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:16 Download gff for BS19845.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18953763..18953886 17..140 100 -> Plus
3L 18954254..18954666 141..553 100 -> Plus
3L 18954729..18954859 554..684 100 -> Plus
3L 18954925..18955115 685..875 100 -> Plus
3L 18955208..18955334 876..1002 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:20 Download gff for BS19845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18946863..18946986 17..140 100 -> Plus
arm_3L 18947354..18947766 141..553 100 -> Plus
arm_3L 18947829..18947959 554..684 100 -> Plus
arm_3L 18948025..18948215 685..875 100 -> Plus
arm_3L 18948308..18948434 876..1002 100   Plus

BS19845.pep Sequence

Translation from 16 to 1002

> BS19845.pep
MNASENYFTMDPTENISQVLDQNRNNTNSLRTHPTVEEYYENMTAFLSLA
IFIASLLTILNISIFATTVSRLRRHLDKPLLGPSIMMVGLYPIISVAALV
TILVPYSWFICHTVMHVMFMVGGPVFRTLLFRYVGSEQNYVKETAGEAVQ
LNTPPCCCCCLCLPMVIPTKAKLCISRYMVWQMPFWQGSIMLVMNILYYR
DIQLYRQVMFFFIPFIVCSIVLGAWSLQITVRMITKVRGDYQLRKKMFCL
QLVVMLCKLQYLVLYDQLDGIKMGGEYPINHTVYKQTIINILILVEMVLV
SMMVQSAYRTPVQVQIDEVNKEKEVTRI*

BS19845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6836-PA 328 CG6836-PA 1..328 1..328 1708 100 Plus