BS19847.complete Sequence
995 bp assembled on 2011-01-04
GenBank Submission: KX801697
> BS19847.complete
GAAGTTATCAGTCGACATGAGTCGCACGGAGCAGACGTTGGAAGACCTGA
AGTCGTATTTGCGGAGTCACAGCAAAATCCGCGAGCAGCGGTCGCACATG
TCTAAGGTTCACTCGGTCTGCTGGAATGCCGATGGTCGTTACCTGGCCTC
CGGAAGCTTCGACAAGACGGTGGTCGTCTACTCGCTGGAGCGGGACCGCT
TCTTGAAGGGCAACACATACCGGGGACACACTGCGTCCGTGGACCAGCTG
TGTTGGCATCGCACCAATCCCGACCAGTTTGCCACCGCAAGCGGAGACAA
GACCGTGCGCATCTGGGACATACGAGTTGGAAAATGCGTATCGGTGACGA
ACACCAAGGGGGAGAATATCAACATTGCCTGGTCGCCCGATGGCAAAACG
ATCGCCGTGGGCAACAAGGAGGATCTGATCACCTTTATAGACACACGCAC
GAACAAGATTCGCGTGGAGGAGCCGTTCAGCTTCGAGGTCAACGAGATAT
CGTGGAACAACACCAACGACCTGTTCTTCCTAACCAACGGACTCGGCTGC
ATGCATATCCTCAGCTATCCCAGTCTCGAGCACCAGATGACCCTGAAGGC
CCATCCCGCCAACTGCATTTGCATTGAGTTCGGACCCACGGGTAAATACT
TTGCCACTGGCTCGGCGGACGCACAAGTCTCCTTGTGGGATGCCAACGAG
CTGGCCTGCCTGCGCATGATCAGCCGCCTGGAGTGGCCCGTCCGCACCAT
ATCGTTTAGCCACGACGAGCGAATGATTGCCTTGGCCAGCGAGGACCTCA
TTATCGACATTGCCTTCACGGAGACGGGCGAGCGGGTAACCGACATTCAC
GTGGACGCCTCCACGTTCACGGTGGCCTGGCATCCGAAGCAATACCTGCT
GGCCTACGCCTGCGATGAGAAGGACAACGATCGGCGACGTGACGCTGGCA
ACGTTAAGATATATGGCTTTTCGGAATAAAAGCTTTCTAGACCAT
BS19847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tex-RA | 963 | CG9615-PA | 1..963 | 17..979 | 4785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tex-RA | 1063 | CG9615-RA | 71..1034 | 17..980 | 4790 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8307893..8308432 | 644..105 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 8307502..8307841 | 980..641 | 1685 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8308484..8308575 | 108..17 | 445 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:16:57 has no hits.
BS19847.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:56:02 Download gff for
BS19847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 48..1008 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:15 Download gff for
BS19847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 71..1031 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:12 Download gff for
BS19847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tex-RA | 71..1031 | 17..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:12 Download gff for
BS19847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8307505..8307840 | 642..977 | 99 | <- | Minus |
| 3R | 8307896..8308430 | 107..641 | 100 | <- | Minus |
| 3R | 8308486..8308575 | 17..106 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:15 Download gff for
BS19847.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4134208..4134297 | 17..106 | 98 | | Minus |
| arm_3R | 4133227..4133562 | 642..977 | 99 | <- | Minus |
| arm_3R | 4133618..4134152 | 107..641 | 100 | <- | Minus |
BS19847.pep Sequence
Translation from 16 to 978
> BS19847.pep
MSRTEQTLEDLKSYLRSHSKIREQRSHMSKVHSVCWNADGRYLASGSFDK
TVVVYSLERDRFLKGNTYRGHTASVDQLCWHRTNPDQFATASGDKTVRIW
DIRVGKCVSVTNTKGENINIAWSPDGKTIAVGNKEDLITFIDTRTNKIRV
EEPFSFEVNEISWNNTNDLFFLTNGLGCMHILSYPSLEHQMTLKAHPANC
ICIEFGPTGKYFATGSADAQVSLWDANELACLRMISRLEWPVRTISFSHD
ERMIALASEDLIIDIAFTETGERVTDIHVDASTFTVAWHPKQYLLAYACD
EKDNDRRRDAGNVKIYGFSE*
BS19847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tex-PA | 320 | CG9615-PA | 1..320 | 1..320 | 1708 | 100 | Plus |
| CG3909-PA | 331 | CG3909-PA | 76..324 | 20..267 | 208 | 25.6 | Plus |
| ebi-PA | 700 | CG4063-PA | 413..679 | 31..291 | 199 | 25.4 | Plus |
| wds-PB | 361 | CG17437-PB | 71..351 | 27..303 | 187 | 25.1 | Plus |
| wds-PA | 361 | CG17437-PA | 71..351 | 27..303 | 187 | 25.1 | Plus |
| ebi-PA | 700 | CG4063-PA | 527..678 | 21..165 | 186 | 28.6 | Plus |
