BS19855.complete Sequence
1244 bp assembled on 2011-01-04
GenBank Submission: KX804744
> BS19855.complete
GAAGTTATCAGTCGACATGTCTATTTTCAAGGCGCGAGTCAAGGAATTTG
AGGATGTTTTGGCGGGGCCACAGGATTTAATTGACCTGAAACAACTCAGG
AAACTGGCATTTAATGGTGTGCCCGATGTGCAGAGTTTTCGAGCACTCAG
TTGGAAGCTACTCCTTGGCTATTTGGGGCCTAGGCGCAGTAGTTGGACCA
CAACCTTGGCCCAAAAGCGAGCCCTGTATAAACAGTTCATCGAGGAGCTA
GTCCTGCCCCCCGGACACTCGAGCAATAGAGCTAGCGTAGACGGAGGAGA
TGGGGACAAAGTCGATTCGGGGGGCGTTGGCCTGCAAGATCATCCGCTGA
GCGAGGGACCCGAAAGCGCGTGGAACACGTTCTTCAATGATAACGAGTTT
CTACTGCAAATCGACAAGGATGTCCGCCGCTTGTGCCCGGACATATCCTT
TTTCCAGCAGCCCACCGATTATCCCTGCGAGATTGTGGTCCACAGCAAAG
GAGAGCATGGACGAAGGCTCCACGAACGGGTGGTTCCCGCCGTTCTAAGT
TCGGCGAATGTGGAACGCAAGGGCCTCGGCATGACAAAGATAAATTTGAT
TACAAAACGCTCCGTTGAAAACTATGCCGCCATGGAGGAGGGCCAAGAGG
CTCACTGGGAAGTTGTGCAACGCATTTTGTTCATCTATGCCAAACTAAAT
CCCGGCCAGGGATATGTCCAGGGCATGAACGAAATCGTGGGACCCATTTA
CTATGTTATGGCCTCCGATCCTGACCTCACATATCGCGCCCACGCTGAGG
CTGATTGTTTCTTTTGTTTTACCGCCCTGATGAGCGAGATAAGAGACTTT
TTTATTAAAACACTAGACGACGCAGAAGGCGGCATCAAGTTCATGATGGC
CAGGCTATCGAATATGCTGAAATCAAAGGACCTAAGCATTTACGAGCTAC
TCAGGAGCCAAGAGCTGCATCCGCAGTATTACAGCTTCAGGTGGCTCACA
CTGCTCCTGTCGCAGGAGTTTCCACTGCCAGATGTACTGCGCATTTGGGA
TTCCGTGTTTGCGGACGAACAGCGATTTGATTTTCTGATAAAAATATGCT
GTTCAATGATATTAATCCAAAGGGAAGCAATTTTGGAAAACGACTTTGCC
TCGAATGTGAAACTCTTGCAAAACTATCCGCCAATTGACATTAATGTTGT
GATTGCTCATGCCGGATCATTGGCGTAGAAGCTTTCTAGACCAT
BS19855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAPsec-RA | 1212 | CG5978-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAPsec-RA | 1544 | CG5978-RA | 127..1339 | 16..1228 | 6065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8622411..8622936 | 1113..588 | 2630 | 100 | Minus |
| 3L | 28110227 | 3L | 8623077..8623550 | 589..116 | 2370 | 100 | Minus |
| 3L | 28110227 | 3L | 8622244..8622358 | 1228..1114 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 8623606..8623688 | 118..36 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:17:53 has no hits.
BS19855.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:56:05 Download gff for
BS19855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5978-RA | 117..1328 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:25 Download gff for
BS19855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAPsec-RA | 128..1339 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:26 Download gff for
BS19855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAPsec-RA | 128..1339 | 17..1228 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:26 Download gff for
BS19855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8622244..8622358 | 1114..1228 | 100 | <- | Minus |
| 3L | 8622411..8622934 | 590..1113 | 100 | <- | Minus |
| 3L | 8623077..8623549 | 117..589 | 100 | <- | Minus |
| 3L | 8623608..8623687 | 37..116 | 100 | <- | Minus |
| 3L | 8623755..8623774 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:25 Download gff for
BS19855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8615344..8615458 | 1114..1228 | 100 | <- | Minus |
| arm_3L | 8615511..8616034 | 590..1113 | 100 | <- | Minus |
| arm_3L | 8616177..8616649 | 117..589 | 100 | <- | Minus |
| arm_3L | 8616708..8616787 | 37..116 | 100 | <- | Minus |
| arm_3L | 8616855..8616874 | 17..36 | 100 | | Minus |
BS19855.pep Sequence
Translation from 16 to 1227
> BS19855.pep
MSIFKARVKEFEDVLAGPQDLIDLKQLRKLAFNGVPDVQSFRALSWKLLL
GYLGPRRSSWTTTLAQKRALYKQFIEELVLPPGHSSNRASVDGGDGDKVD
SGGVGLQDHPLSEGPESAWNTFFNDNEFLLQIDKDVRRLCPDISFFQQPT
DYPCEIVVHSKGEHGRRLHERVVPAVLSSANVERKGLGMTKINLITKRSV
ENYAAMEEGQEAHWEVVQRILFIYAKLNPGQGYVQGMNEIVGPIYYVMAS
DPDLTYRAHAEADCFFCFTALMSEIRDFFIKTLDDAEGGIKFMMARLSNM
LKSKDLSIYELLRSQELHPQYYSFRWLTLLLSQEFPLPDVLRIWDSVFAD
EQRFDFLIKICCSMILIQREAILENDFASNVKLLQNYPPIDINVVIAHAG
SLA*
BS19855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAPsec-PA | 403 | CG5978-PA | 1..403 | 1..403 | 2103 | 100 | Plus |
| CG8449-PA | 654 | CG8449-PA | 58..396 | 23..399 | 283 | 25.3 | Plus |
| CG5745-PA | 546 | CG5745-PA | 321..528 | 210..399 | 248 | 31.5 | Plus |
| Tbc1d15-17-PC | 715 | CG11490-PC | 444..579 | 196..348 | 168 | 25.5 | Plus |
| Tbc1d15-17-PB | 715 | CG11490-PB | 444..579 | 196..348 | 168 | 25.5 | Plus |
