BS19856.complete Sequence
1244 bp assembled on 2011-01-04
GenBank Submission: KX801381
> BS19856.complete
GAAGTTATCAGTCGACATGATAAAAACAAAGAGCAGCGACGACAAACTCG
ACACGCTCCTCTCGCGCAGCGTGGTTCCGATCATCGATCTCGCCCACTGT
GGCATCGAGGAGGTGCCGGTCAAGTCGGTGGTCAACCGCGTGGGTCACCA
GCTGAAGAAAGCGCTCTCCGAGAAGGGCATGGCCCTGCTGGTCAACCATG
GCATCTCCGATGAGAAGCTCAAGACTGCCTGGGATCACCTGGATGACTTC
GTGAATCTGCCGCCGGACATCCGACAGCACTATATCCGTGCCGATGGAGA
CAAACATGGCTACGTGAGTCGTGGTCAGCAGCAGCGATTCGATGGCAAGT
CGCCGGAGCTGCGTCACGCTTTCAATATCAGCACACTGAACGCTCAGAAT
CTGCCAGAGGAGCCGCTGCCAGGATTTGCGGACCACATCAGCACCCTGGC
CACGGACTTCAAGGCGCTGGCCAGCTTTATACTGCAGGCGCTGGCCGTCT
CCCTGGACATTCCGCACACGTTCTTCCTCGAAAAGCACTCGCACATGCTG
TCCGGCGACCACGACAACATGAGCTCCCTGCGCATGCTCTACTATCCGCC
CATAGTGGACGACGAGCCCGGCCAGAACGACGTGATCAAGGGTCGCTGCC
AGTACAGCTACCAGCGCTGTCTGTCCAACCAGCCAGATTTCCGGCCGGAG
CACAATCCCCGCGACGAGGACGACCTCAACGAGGTGGATGGGCCCAATGG
CCAATTGTTCGAGCACAAGCTGGGCAACGGCGCCGTCATCCAGTGTCCAC
CACACGTGGACTACGGCACCTTCACCCTGCTCTCCCAGGACTCGGAGGGC
GGACTGGAGGTGAGGCTGCCCGGCAGCGAAAAGTGGAATCGCGTGGGCCA
CCTGCCCGGCTCCATACTCGTCAACTGTGGCGAGATCTTAAATATCTGGA
CACAGGGACGATATCCGGCATTGCAACATCGCGTGATAATACCGGAGCAG
GAAACTATTCGGGCTCGTGGCCGCCACTCGATAGCGTTCTTCTGCCATCC
GGACAACATCACCACGATATCGCCCACCGATCTGCCCAATCCAGATGCCG
TCCAGGACAAGGCGTGTCTCAAGCAGCGCAAGAAGTCCTTCAAGGCGGCG
AAAGAAAGAGTCTACAATGCCTATCAGTTGATACAGAAAAAGTTTAGAGA
TACGTATAGCAGTAACAATCACTCATAAAAGCTTTCTAGACCAT
BS19856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5346-RA | 1212 | CG5346-PA | 1..1212 | 17..1228 | 6045 | 99.9 | Plus |
| CG33099-RA | 996 | CG33099-PA | 619..710 | 806..897 | 205 | 81.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5346-RA | 1921 | CG5346-RA | 480..1691 | 17..1228 | 6045 | 99.9 | Plus |
| CG33099-RA | 1248 | CG33099-RA | 739..830 | 806..897 | 205 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22521035..22521792 | 973..216 | 3790 | 100 | Minus |
| 3R | 32079331 | 3R | 22520504..22520689 | 1158..973 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 22522034..22522150 | 217..101 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 22526787..22526872 | 102..17 | 415 | 98.8 | Minus |
| 3R | 32079331 | 3R | 22520317..22520388 | 1228..1157 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 22529461..22529552 | 897..806 | 205 | 81.5 | Minus |
Blast to na_te.dros performed 2014-11-26 15:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3746..3875 | 812..690 | 120 | 61.7 | Minus |
| opus | 7521 | opus OPUS 7521bp | 5723..5762 | 277..238 | 110 | 75 | Minus |
BS19856.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:56:05 Download gff for
BS19856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5346-RA | 478..1687 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:28 Download gff for
BS19856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5346-RA | 480..1689 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:29 Download gff for
BS19856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5346-RA | 480..1689 | 17..1226 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:29 Download gff for
BS19856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22520319..22520386 | 1159..1226 | 100 | <- | Minus |
| 3R | 22520504..22520688 | 974..1158 | 100 | <- | Minus |
| 3R | 22521035..22521790 | 218..973 | 100 | <- | Minus |
| 3R | 22522034..22522149 | 102..217 | 100 | <- | Minus |
| 3R | 22526788..22526872 | 17..101 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:28 Download gff for
BS19856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18346041..18346108 | 1159..1226 | 100 | <- | Minus |
| arm_3R | 18346226..18346410 | 974..1158 | 100 | <- | Minus |
| arm_3R | 18346757..18347512 | 218..973 | 100 | <- | Minus |
| arm_3R | 18347756..18347871 | 102..217 | 100 | <- | Minus |
| arm_3R | 18352510..18352594 | 17..101 | 98 | | Minus |
BS19856.pep Sequence
Translation from 16 to 1227
> BS19856.pep
MIKTKSSDDKLDTLLSRSVVPIIDLAHCGIEEVPVKSVVNRVGHQLKKAL
SEKGMALLVNHGISDEKLKTAWDHLDDFVNLPPDIRQHYIRADGDKHGYV
SRGQQQRFDGKSPELRHAFNISTLNAQNLPEEPLPGFADHISTLATDFKA
LASFILQALAVSLDIPHTFFLEKHSHMLSGDHDNMSSLRMLYYPPIVDDE
PGQNDVIKGRCQYSYQRCLSNQPDFRPEHNPRDEDDLNEVDGPNGQLFEH
KLGNGAVIQCPPHVDYGTFTLLSQDSEGGLEVRLPGSEKWNRVGHLPGSI
LVNCGEILNIWTQGRYPALQHRVIIPEQETIRARGRHSIAFFCHPDNITT
ISPTDLPNPDAVQDKACLKQRKKSFKAAKERVYNAYQLIQKKFRDTYSSN
NHS*
BS19856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5346-PA | 403 | CG5346-PA | 1..403 | 1..403 | 2152 | 100 | Plus |
| CG33099-PA | 331 | CG33099-PA | 1..330 | 1..401 | 1027 | 51.1 | Plus |
| CG33093-PA | 322 | CG33093-PA | 6..290 | 12..356 | 795 | 48.3 | Plus |
