BS19859.complete Sequence
1523 bp assembled on 2011-01-04
GenBank Submission: KX805649
> BS19859.complete
GAAGTTATCAGTCGACATGAGCACGCGAAGACAGACCAGTCCTCTGAGGA
ATCTTCGCCAGAAATGCGGCGGCAGTTGCACTAGTGACGATGACCTGCCT
GAGGTCAAGTTAATCACCCAGCCCATCAATGGTCTGCATTACATCCGGAA
TCGACTGAGACCACCGAAATCCCGAAACGGCATTTACTACAGCACAGATT
GGGACAAGTCTGCGCTGGTCAGCAATTTCCAGAAAAGAGGTTGGCTACAG
GTGCCCTCCTTTAATGGCGAATGGAACTTCTATTGGGCGTGCACCCAGAA
TTGTCGCTACATCTTCGGCATCGATCATCCATATCGCATGCGATCAGATC
AAGTCATTAACCACTTCCCGAACTCCATTGAGCTGTCGCGCAAGGATTTG
CTAATCAAGAACATCAAGCGCTATCGCAAAGATCTGGAGCGACGTGGCGA
TCCGTTGGCTCAAAGCCATCCACCGGATACGAAACTGGGCATAGGCGGTA
CCCGTTACAAGCACCTGGACATCATACCCATGACCTTTGTCCTCCCCTCC
GATTACCAAATGTTCGTCGAGGTCTTCCATCGCAATCCGGCCAGCACGTG
GATAGTGAAGCCATGCAGCAAGTCCCAGGGTGTAGGTATCTATCTGGTCA
ACAAGTTGTCCAAACTGAAAAAATTCGCATACGATGCGCGCACCTTCTAT
CCGCAAATCAACCGGGACACCTGCGTCATTTCCAAGTACATCGACAATCC
ACTGCTGATCGGCGGCAAGAAATTCGACCTGCGACTCTTCGTCCTTGTGA
CCACATTCAATCCGCTCAAGGCTTATCTCTATAAGGAGGGTTTCTGCCGT
TTTTGCACCGAGAAGTACGACGAAACTGAGATTGATAACGTGTTTATGCA
CTTGACGAACGTCAGCATCCAGAAAACGAATCAAGAGTACAATTCCATCC
ATGGTGGCAAATGGCCACTCCAGAATCTGTGGCTGTACTTGGACAGCCTG
CGAGGCGAGGGCGTTTCGGATATGCTGTGGAGCCGCATCACCGCCACCAT
CAGGCACTCCTTGGACGCAGTGGCTCCGGTGATGGCCAACGATCGTCATT
GTTTCGAGGTCTATGGCTATGACATAATCATTGATAATAACCTGAAGCCC
TGGCTGATCGAGATCAATACATCGCCGTCCATGCACTCGACCACCACGAA
CGACCGCATGCTCAAATCGCGGCTAATAGACAACGTTCTGGATGTGGTGG
TTCCGCCGAATTGTATGCCAAATGAGCACTGGGATAAAACGCCCAATCCA
GAGTTGTTAAAAAACTTTACCGTTCTGATGCCCATTTCGCCATGTAAGCC
CAAGGAGCAAGTCCCCGTTCGACGCAAGGGCAGATTATCGAAGAAAAAGA
AGTCCAAGTCCACTACTGCATCTTCAGGTATTTGCTCATTTACTCCACCG
CCCGCCGAAGGAGAGACCAAAATTAAAAGGTCTAACAAAGTAGTAAAACG
GTTGTGAAAGCTTTCTAGACCAT
BS19859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8918-RA | 1491 | CG8918-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8918-RA | 1630 | CG8918-RA | 81..1571 | 17..1507 | 7455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17201553..17202132 | 931..352 | 2900 | 100 | Minus |
| X | 23542271 | X | 17201077..17201417 | 1272..932 | 1705 | 100 | Minus |
| X | 23542271 | X | 17202184..17202518 | 351..17 | 1675 | 100 | Minus |
| X | 23542271 | X | 17200785..17201019 | 1507..1273 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:17:30 has no hits.
BS19859.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:56:03 Download gff for
BS19859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8918-RA | 81..1570 | 17..1506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:22 Download gff for
BS19859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8918-RA | 81..1570 | 17..1506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:19 Download gff for
BS19859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8918-RA | 81..1570 | 17..1506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:19 Download gff for
BS19859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17200786..17201019 | 1273..1506 | 100 | <- | Minus |
| X | 17201077..17201417 | 932..1272 | 100 | <- | Minus |
| X | 17201553..17202132 | 352..931 | 100 | <- | Minus |
| X | 17202184..17202518 | 17..351 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:22 Download gff for
BS19859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17094819..17095052 | 1273..1506 | 100 | <- | Minus |
| arm_X | 17095110..17095450 | 932..1272 | 100 | <- | Minus |
| arm_X | 17095586..17096165 | 352..931 | 100 | <- | Minus |
| arm_X | 17096217..17096551 | 17..351 | 100 | | Minus |
BS19859.pep Sequence
Translation from 16 to 1506
> BS19859.pep
MSTRRQTSPLRNLRQKCGGSCTSDDDLPEVKLITQPINGLHYIRNRLRPP
KSRNGIYYSTDWDKSALVSNFQKRGWLQVPSFNGEWNFYWACTQNCRYIF
GIDHPYRMRSDQVINHFPNSIELSRKDLLIKNIKRYRKDLERRGDPLAQS
HPPDTKLGIGGTRYKHLDIIPMTFVLPSDYQMFVEVFHRNPASTWIVKPC
SKSQGVGIYLVNKLSKLKKFAYDARTFYPQINRDTCVISKYIDNPLLIGG
KKFDLRLFVLVTTFNPLKAYLYKEGFCRFCTEKYDETEIDNVFMHLTNVS
IQKTNQEYNSIHGGKWPLQNLWLYLDSLRGEGVSDMLWSRITATIRHSLD
AVAPVMANDRHCFEVYGYDIIIDNNLKPWLIEINTSPSMHSTTTNDRMLK
SRLIDNVLDVVVPPNCMPNEHWDKTPNPELLKNFTVLMPISPCKPKEQVP
VRRKGRLSKKKKSKSTTASSGICSFTPPPAEGETKIKRSNKVVKRL*
BS19859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8918-PA | 496 | CG8918-PA | 1..496 | 1..496 | 2681 | 100 | Plus |
| CG32238-PA | 487 | CG32238-PA | 76..484 | 56..465 | 1290 | 59.8 | Plus |
| CG31108-PB | 917 | CG31108-PB | 210..561 | 50..424 | 481 | 35.3 | Plus |
| CG31108-PA | 917 | CG31108-PA | 210..561 | 50..424 | 481 | 35.3 | Plus |
| CG16833-PM | 827 | CG16833-PM | 370..660 | 108..414 | 453 | 32.9 | Plus |
