BS19902.complete Sequence
1727 bp assembled on 2011-02-17
GenBank Submission: KX804531
> BS19902.complete
GAAGTTATCAGTCGACATGTTGGGACTACAACGTTTTGCCGGCAGTTTTG
TCACCCAGTTGTACCGCCGTGCAGCCTTCAGCAGCAGTGTCCGGGCAGCG
GGCATTCCCGTGGCGCCCACTGGAGCACAATCGGATGCAGTGGAGCCGGA
AGCACGCGCGCCGGCTGTGGAGGAGGCGGCCAAAAAGCCCAGGGGCCACA
TGGTAGCCGCTGCTTTCGAATCCCTTAGAAACGACGATCCCAAAGATGAG
AGCAAAAGCCAAGCCTCCAGCAAGATCGATGAGCGTATCATCAACGCAAA
GACAGTCAATGGACTGCTAACTATCACGGAGAACAACAATGGCTTCTCGA
GGAAGCATGCCCTCAGAATTGTCTCCATACTGGCCGAGTGGAGCACCTTG
AATCGAGTAAAGATCTCGGAATTCGAGAACGACACAAGGTTCCTACGTAT
TTGCCGGATGTTGGGCCGGACGGTTCCCAAAAATAATAATGCTAACAACA
AGGACCTTGGTGACAATGGGACGGCCAAGCGGATTTCCGGCTTCCGAACA
GATGACCTAAACACGGTGCTTGGCGTAGCTGGTGACGATGAGGCCGCTAA
GCTGATAGCTAGCATCAGTCTGCCCCAGATGGTCAAGGTGATGAGCACCC
TGGCCCAGCGGAAGAGGCGTAGTACTCCTCTCTTGCGCTCCCTGGCCTTT
AATATCAGCAGCGCGTCGGAATCGCTGGATTTAAAGCAAGCGGGGGATGT
GCTGTTCGCTATGTCCACGTTGAATTTCCAGGATTCTGTTCTAGGCGCTA
AAGTGTGTGCGGATGTGCAATCGGCGCTGCCTAAGAATGTGGAGAAGTCT
GCCGTTGTGGGATCCATTATCACCAGCCTGGGCATTTTACGATACCGGGA
TTTGGATATCTTGGAATCACTTACGCAGTGGCTTTTAAAGAATAGTGAAA
TCTGTCGCCCCCAAGATCTCAGTGCCTATTTCCTAACATCGGCCCTGCTA
AACTTCAAAAGCGCTCAATTGGAGGAAGTGAGCAAAAAGCTAGTAAAGTC
TATTGTCCGCGAGGATTTTACCAAGCAATCCGAGTGGTTGAGCTTTGTGT
GGTCGCTAACAATGTTGGGTCTAGTAGAACACGGCCACTTGGCTTCTGTT
TTGAGTGCGGACTTCCTAGAGACGTTGAAAAAGGACAAAGCTGGTGTCAC
AGCTACCTCCAAAATGAGGCTACTCAACTTGAATAGCTATGCCCAGTTAA
TAGCCACAGATTACAAGGGTCCACTATTGCCCACTGACAGTCCTGTCTAT
CAGGTGCCCATGGCTCATCCTAAAGCAAAGCAAGTGCTTGTAAATGGAAT
GCTAGATGCCCTGAAAAGTCTGCTGCCGGCCAGCAATCATTTACAAACTG
CTGTAGACACTAAAATGGGCTTCCTTATAGATGCACTGTGCCATTTTGAT
GCTAACAAAAACCCCCTGCCTTTGGACAAGGAAAATCCGAATGCAATAAG
GGTGGCGCTGATGGTCATCGATTTCCATGACATTTGCCACGGAACGCATC
GCAGTGGCAGCGGCGTTACGAATCTGACATTTGATCTGCTAGAGAAGAGT
GGTTACCACGTTATTCCCGTGCCCTATAATGAGTTCAGCACCAGTGACAA
ACTACTGAAACGCGTTCAGTATTTGGAGTCAAAGTTCAAGGCGATTGCAA
GTAGCAAATAAAAGCTTTCTAGACCAT
BS19902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13850-RB | 1695 | CG13850-PB | 1..1695 | 17..1711 | 8475 | 100 | Plus |
| CG13850-RA | 1695 | CG13850-PA | 1..1695 | 17..1711 | 8475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13850-RB | 1876 | CG13850-RB | 78..1772 | 17..1711 | 8475 | 100 | Plus |
| CG13850-RA | 1876 | CG13850-RA | 78..1772 | 17..1711 | 8475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22409712..22410423 | 905..194 | 3560 | 100 | Minus |
| 3R | 32079331 | 3R | 22409063..22409343 | 1430..1150 | 1390 | 99.6 | Minus |
| 3R | 32079331 | 3R | 22409399..22409649 | 1155..905 | 1255 | 100 | Minus |
| 3R | 32079331 | 3R | 22408670..22408882 | 1711..1499 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 22410485..22410663 | 195..17 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 22408939..22409011 | 1501..1429 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:54:02 has no hits.
BS19902.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:28 Download gff for
BS19902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13850-RA | 87..1774 | 22..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:26 Download gff for
BS19902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13850-RA | 83..1770 | 22..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:19 Download gff for
BS19902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13850-RA | 83..1770 | 22..1709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:19 Download gff for
BS19902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22409399..22409648 | 906..1155 | 100 | <- | Minus |
| 3R | 22408672..22408880 | 1501..1709 | 100 | <- | Minus |
| 3R | 22408940..22409009 | 1431..1500 | 100 | <- | Minus |
| 3R | 22409063..22409337 | 1156..1430 | 100 | <- | Minus |
| 3R | 22409712..22410422 | 195..905 | 100 | <- | Minus |
| 3R | 22410486..22410658 | 22..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:26 Download gff for
BS19902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18234394..18234602 | 1501..1709 | 100 | <- | Minus |
| arm_3R | 18234662..18234731 | 1431..1500 | 100 | <- | Minus |
| arm_3R | 18234785..18235059 | 1156..1430 | 100 | <- | Minus |
| arm_3R | 18235121..18235370 | 906..1155 | 100 | <- | Minus |
| arm_3R | 18235434..18236144 | 195..905 | 100 | <- | Minus |
| arm_3R | 18236208..18236380 | 22..194 | 100 | | Minus |
BS19902.pep Sequence
Translation from 16 to 1710
> BS19902.pep
MLGLQRFAGSFVTQLYRRAAFSSSVRAAGIPVAPTGAQSDAVEPEARAPA
VEEAAKKPRGHMVAAAFESLRNDDPKDESKSQASSKIDERIINAKTVNGL
LTITENNNGFSRKHALRIVSILAEWSTLNRVKISEFENDTRFLRICRMLG
RTVPKNNNANNKDLGDNGTAKRISGFRTDDLNTVLGVAGDDEAAKLIASI
SLPQMVKVMSTLAQRKRRSTPLLRSLAFNISSASESLDLKQAGDVLFAMS
TLNFQDSVLGAKVCADVQSALPKNVEKSAVVGSIITSLGILRYRDLDILE
SLTQWLLKNSEICRPQDLSAYFLTSALLNFKSAQLEEVSKKLVKSIVRED
FTKQSEWLSFVWSLTMLGLVEHGHLASVLSADFLETLKKDKAGVTATSKM
RLLNLNSYAQLIATDYKGPLLPTDSPVYQVPMAHPKAKQVLVNGMLDALK
SLLPASNHLQTAVDTKMGFLIDALCHFDANKNPLPLDKENPNAIRVALMV
IDFHDICHGTHRSGSGVTNLTFDLLEKSGYHVIPVPYNEFSTSDKLLKRV
QYLESKFKAIASSK*
BS19902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13850-PB | 564 | CG13850-PB | 1..564 | 1..564 | 2826 | 100 | Plus |
| CG13850-PA | 564 | CG13850-PA | 1..564 | 1..564 | 2826 | 100 | Plus |
