BS19903.complete Sequence
1886 bp assembled on 2011-01-28
GenBank Submission: KX801587
> BS19903.complete
GAAGTTATCAGTCGACATGGCCACCGAAGAGAGCTATGTGCCCAATGCCT
TCGATGCGGAGTTCGATAACTTCTGGGACACAGTCAGCTGCTACGCGGCC
AACACGTTTCCCTTCGAGGAAAGGTGTGCCTTTGTGGCGAGTGCCAAGGA
CTGCAATAGGAGCACTAATGTGCTGCCATACATGAGGATCATGGCCTGCG
ATCTGAACTGCGTAAACGAATTCGAGCAGGTTATCTTCCTCGCTCTGTTC
ATGGGTCTGTGCTACGAGATACTTGTTCTGCTGATCCACGTTTGCAACAA
ATACTACAGTCCTGCTCTAAAGGCCGTGTCGCGGTTCCTCTGTATGAACG
AGCACGTGGCGGGCGTGACCTTGTTGGCTTTTGGGAACAGCTCCGCCGAC
CTATTCTCCAACTTGGCCAGTGTGAATGCGAATGTGCCCGTGTTTGCCAA
TAGTTTGGCCGCCGCCCTCTTTGTGTCCATGGTTTCAGGAGGCCTGATCT
GCTACACGAGTCCCTTCAAGATGAACGCGTACGAAAGTGTTCGGGACATT
TTGTTTCTTATCTTCGGATCAATGCTCCTTCAGTACTTCCTGGCCAGCAG
TGCACATGTACCCGAAACGTCATTCATAGTTATGTTTCTTGTATACATTT
TTTACATATTAGTGAATGTCGTTGATGTGTATCTTATTCGGAGGGCTTTA
AAGACAACAAATGCACAGATTGATGCCCTCTTGGTAGGAGAAATGACTCC
AGAAAAGAGAAAGCGGCTGAGTGAATTGGAAAGGAACCAGGCGATCTACA
CCCGTGACATGGAAGTGGAGATTTTTGAAAGGACCAACTCGGGTCCCAAC
ATCAACAAAATAAGGTACACCACCTTGAGAATGGGCCGCAGCACTCGCAT
AAGCCTCGATAGGAAGGCCACACGGATGGTATTGCACAACAGAGCTCTGG
GACGGAACTGGGGACTATTCAAGGACCTCTTCATAGCCCTGAGGCCAATT
AACTGTGAAAAGTGGCGGAAAGGAAACATAATCAAGCGCGCCTTTATGTT
GACCAAAATACCAGCTGTGATCATATGCTGCATCTACATACCTCTGGTGG
ACTACGAGCTGGACAAACATGGCTGGAACAAGCTTCTGAATTGCATTCAA
GTAATGCTAAATCCGGCAATGTCCATAATGGCCATTAAAGCTTTGCTATC
ATCTAGGGGCAACTCGCTGTGGTACGTTGCCATGGGCGAGGAAGCCATTT
ATGCTATGTATTCCCTGCCCATAACCGTGCCGATAGCGGTCTTTATGTTT
ATCCAATCTCGAACCGATGTGCCACCATTTTACCATTCGGTGTTTACTGT
AATGAACCTAACTGGCTCTATGTTTATGATCTTCATTTGCGCGACGGAAA
TAGACAAGGTCCTGGAAGTTATTGGCCACATCCTGAAGGTGGAGGACGAC
TTTATGGGCGCAACGGTGAAGGCTTGTACGGGAAGTCTGGGTCCACTAAT
TGCCAACGTGGCGATGGCATTGCACGGATATCCCAGGATGGCCTACGCCT
CAGCCATTGGAGGACCCTTCTTCACCGTTGTCATGTCCGCCAGCACTGTG
ATGCATGTCAAGAATCTATTTGGCCTCCCGGTCTCGGAAGCTAACCAAAC
GGGCAATTACGGCTTAAATGCATTCATTTTTCTAAACCTGGGTGTGTTTT
CCACTCTTCTATGGTCCACGACGCTGGGATTTTTCGCCAGGCGCTCCGTG
GGCATATTTTCTATCGTGTTTTACTGCATTTACTTGCTTTTTGCTATCCT
AATTCATAGAAAAGTCATACATTCGTTTTCTGTGGACTTGCCAGTCAAGG
CAGCATTCGGTGATATCTAGAAGCTTTCTAGACCAT
BS19903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12376-RA | 1854 | CG12376-PA | 1..1854 | 17..1870 | 9270 | 100 | Plus |
| CG12376-RB | 1527 | CG12376-PB | 1..1527 | 344..1870 | 7635 | 100 | Plus |
| CG5348-RC | 708 | CG5348-PC | 61..572 | 53..564 | 520 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12376-RA | 2039 | CG12376-RA | 81..1934 | 17..1870 | 9270 | 100 | Plus |
| CG12376-RB | 1692 | CG12376-RB | 1..1587 | 284..1870 | 7935 | 100 | Plus |
| CG5348-RC | 2126 | CG5348-RC | 126..637 | 53..564 | 520 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8703052..8703537 | 705..1190 | 2430 | 100 | Plus |
| 2R | 25286936 | 2R | 8702535..8702860 | 304..629 | 1630 | 100 | Plus |
| 2R | 25286936 | 2R | 8704102..8704397 | 1575..1870 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 8701915..8702201 | 17..303 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 8703813..8704048 | 1339..1574 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 8703605..8703758 | 1189..1342 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 8702921..8702998 | 627..704 | 390 | 100 | Plus |
| 2R | 25286936 | 2R | 16767237..16767497 | 304..564 | 375 | 76.2 | Plus |
| 2R | 25286936 | 2R | 16766929..16767083 | 53..207 | 235 | 76.8 | Plus |
| 2R | 25286936 | 2R | 16768151..16768208 | 1083..1140 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:11 has no hits.
BS19903.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:53 Download gff for
BS19903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12376-RA | 81..1934 | 17..1870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:17 Download gff for
BS19903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12376-RA | 81..1934 | 17..1870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:29 Download gff for
BS19903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12376-RA | 81..1934 | 17..1870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:29 Download gff for
BS19903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8704102..8704397 | 1575..1870 | 100 | | Plus |
| 2R | 8701915..8702201 | 17..303 | 100 | -> | Plus |
| 2R | 8702535..8702860 | 304..629 | 100 | -> | Plus |
| 2R | 8702924..8702998 | 630..704 | 100 | -> | Plus |
| 2R | 8703052..8703537 | 705..1190 | 100 | -> | Plus |
| 2R | 8703607..8703755 | 1191..1339 | 100 | -> | Plus |
| 2R | 8703814..8704048 | 1340..1574 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:17 Download gff for
BS19903.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4589420..4589706 | 17..303 | 100 | -> | Plus |
| arm_2R | 4590040..4590365 | 304..629 | 100 | -> | Plus |
| arm_2R | 4590429..4590503 | 630..704 | 100 | -> | Plus |
| arm_2R | 4590557..4591042 | 705..1190 | 100 | -> | Plus |
| arm_2R | 4591112..4591260 | 1191..1339 | 100 | -> | Plus |
| arm_2R | 4591319..4591553 | 1340..1574 | 100 | -> | Plus |
| arm_2R | 4591607..4591902 | 1575..1870 | 100 | | Plus |
BS19903.pep Sequence
Translation from 16 to 1869
> BS19903.pep
MATEESYVPNAFDAEFDNFWDTVSCYAANTFPFEERCAFVASAKDCNRST
NVLPYMRIMACDLNCVNEFEQVIFLALFMGLCYEILVLLIHVCNKYYSPA
LKAVSRFLCMNEHVAGVTLLAFGNSSADLFSNLASVNANVPVFANSLAAA
LFVSMVSGGLICYTSPFKMNAYESVRDILFLIFGSMLLQYFLASSAHVPE
TSFIVMFLVYIFYILVNVVDVYLIRRALKTTNAQIDALLVGEMTPEKRKR
LSELERNQAIYTRDMEVEIFERTNSGPNINKIRYTTLRMGRSTRISLDRK
ATRMVLHNRALGRNWGLFKDLFIALRPINCEKWRKGNIIKRAFMLTKIPA
VIICCIYIPLVDYELDKHGWNKLLNCIQVMLNPAMSIMAIKALLSSRGNS
LWYVAMGEEAIYAMYSLPITVPIAVFMFIQSRTDVPPFYHSVFTVMNLTG
SMFMIFICATEIDKVLEVIGHILKVEDDFMGATVKACTGSLGPLIANVAM
ALHGYPRMAYASAIGGPFFTVVMSASTVMHVKNLFGLPVSEANQTGNYGL
NAFIFLNLGVFSTLLWSTTLGFFARRSVGIFSIVFYCIYLLFAILIHRKV
IHSFSVDLPVKAAFGDI*
BS19903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12376-PA | 617 | CG12376-PA | 1..617 | 1..617 | 3180 | 100 | Plus |
| CG12376-PB | 508 | CG12376-PB | 1..508 | 110..617 | 2591 | 100 | Plus |
| CG5348-PB | 625 | CG5348-PB | 16..625 | 8..617 | 1897 | 57.4 | Plus |
| CG14744-PC | 620 | CG14744-PC | 16..614 | 13..607 | 963 | 32.7 | Plus |
| CG14743-PB | 611 | CG14743-PB | 11..608 | 9..611 | 825 | 29.4 | Plus |
