BS19909.complete Sequence
2087 bp assembled on 2011-01-28
GenBank Submission: KX805810
> BS19909.complete
GAAGTTATCAGTCGACATGTGCAGCCGGAAATGCTTCCGCATGCCCACCC
TGGTCATCTGCGGCGTCGTACTGACCATTATCCTGGTCTGCATCACGGGC
ATCACGCTGACGAACAGCATCAACATATCGAATATCGTGAAGCTGCGCGA
GAAGGTGGCCAGCGATTCGGCGGCGGCCAATGGGGGTCACCAGGCGGCCC
AGACGCGGGCGGCTCTCGTTGAGCAGCAGTACTCCACGCTGCAGCAGCAT
CATCTTTCCCGCAGCGATCTCAACTATATTCAGGCGGCGACACATCCGAA
GAATCTACAGCGCCAACTGCAGCAGCAGCAGCAGCAACAGTTGCAACAGC
AGCAACCGAATAAGATTGTCATCGAAATTGGTCTGAGCAATGACAGCGGA
CCAAGCAGTGCGCCCGCAAGCAGTACACTTGGTTCAAGCAGTACCGGTCC
GCGTATTCTTCAGGCGGCCGAGGCTTTGATGGAGGGTAATGTGGATTCGA
TTTCATTGCCAGCAGCAGCGCCGCTAACAGCAGCTACTACAAGTTCAGCT
AAAAGCTTAGAAAACAGCCAAGGGAGCGATACGCCGCATAGCCATGCAAA
TACTACCAATGCAGATATTACAATGGGCATCGCCGATCACAATCCAGGGG
GCATTCAGTTCGAGCGACGCGCCCACGTTAAACAGATGATGGAACATGCG
TGGCACAATTACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCT
TTCGCAGCGACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTG
CTACAATCGTCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAG
GAATATCGCGAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACAA
TATCAGCGCAGAGTTGAGTGTTTTCGAAACGAACATTCGTTTTGTTGGCG
GCATGCTGACGCTGTACGCCTTTACGGGCGATCCACTGTACAAGGAGAAG
GCCCAGCACGTTGCCGACAAGCTGCTGCCCGCCTTCCAAACACCAACGGG
TATTCCCTACGCGCTGGTCAACACCAAGACCGGTGTGGCCAAGAACTACG
GCTGGGCATCCGGCGGCAGTTCTATCCTATCCGAATTTGGCACACTGCAT
CTGGAATTTGCCTATCTGAGCGACATTACCGGGAATCCACTGTATCGGGA
ACGAGTCCAGACCATTCGCCAAGTGCTCAAGGAGATCGAGAAACCAAAGG
GCCTCTATCCCAACTTCCTTAATCCCAAGACAGGCAAATGGGGGCAACTT
CACATGTCATTGGGCGCTCTGGGCGACAGCTACTACGAGTACTTGCTGAA
GGCCTGGCTGCAATCCGGCCAAACGGATGAGGAAGCCCGCGAGATGTTCG
ACGAGGCAATGCTGGCCATTCTGGATAAGATGGTCCGCACAAGTCCCGGC
GGACTGACATACGTCTCTGATCTCAAGTTCGACAGGCTGGAGCATAAGAT
GGACCATTTGGCTTGCTTCTCGGGTGGCCTCTTCGCTTTGGGAGCGGCTA
CACGTCAAAATGACTATACGGACAAGTACATGGAGGTGGGCAAGGGCATT
ACGAATACCTGCCACGAGAGCTACATCAGAGCACCCACTCAGCTGGGACC
CGAGGCCTTTAGATTCAGCGAAGCTGTGGAGGCGCGAGCACTGAGATCGC
AGGAGAAGTACTACATTCTACGGCCAGAGACTTTCGAGAGCTACTTTGTG
CTGTGGCGACTCACGCACGACCAGAAATACCGCGACTGGGGCTGGGAGGC
GGTCCTCGCCCTGGAGAAGCACTGCCGCACGGCGCACGGATATTGTGGCC
TGCGCAACGTCTACCAGCAGGAGCCGCAAAAGGACGACGTTCAGCAAAGC
TTCTTCCTCGCCGAAACGCTTAAGTACCTGTACTTGCTGTTCTCGGACGA
TTCGGTGCTGCCGCTGGACGAATGGGTGTTCAACACGGAGGCCCATCCGC
TGCCGATCAAGGGTGCGAATGCGTACTATAGACAGGCGCCCGTAACGCTT
CCGGTTTCGAACGCATCGTAAAAGCTTTCTAGACCAT
BS19909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RI | 2055 | CG42275-PI | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| alpha-Man-I-RO | 2004 | CG42275-PO | 613..2004 | 680..2071 | 6945 | 99.9 | Plus |
| alpha-Man-I-RN | 2004 | CG42275-PN | 613..2004 | 680..2071 | 6945 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RI | 4102 | CG42275-RI | 546..2602 | 16..2072 | 10285 | 100 | Plus |
| alpha-Man-I-RO | 3808 | CG42275-RO | 916..2308 | 680..2072 | 6950 | 99.9 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 961..2353 | 680..2072 | 6950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10307893..10308562 | 685..16 | 3350 | 100 | Minus |
| X | 23542271 | X | 10278579..10279193 | 1298..684 | 3075 | 100 | Minus |
| X | 23542271 | X | 10277761..10278027 | 1924..1658 | 1335 | 100 | Minus |
| X | 23542271 | X | 10278291..10278517 | 1525..1299 | 1135 | 100 | Minus |
| X | 23542271 | X | 10277555..10277704 | 2072..1923 | 750 | 100 | Minus |
| X | 23542271 | X | 10278092..10278231 | 1662..1523 | 700 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2502 | 222..373 | 196 | 63.2 | Plus |
BS19909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:54 Download gff for
BS19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RI | 547..2599 | 17..2069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:45 Download gff for
BS19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RI | 547..2599 | 17..2069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:55 Download gff for
BS19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RI | 547..2599 | 17..2069 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:55 Download gff for
BS19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10277558..10277702 | 1925..2069 | 100 | <- | Minus |
| X | 10277761..10278022 | 1663..1924 | 100 | <- | Minus |
| X | 10278092..10278230 | 1524..1662 | 100 | <- | Minus |
| X | 10278293..10278517 | 1299..1523 | 100 | <- | Minus |
| X | 10278579..10279191 | 686..1298 | 100 | <- | Minus |
| X | 10307893..10308561 | 17..685 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:45 Download gff for
BS19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10171591..10171735 | 1925..2069 | 100 | <- | Minus |
| arm_X | 10171794..10172055 | 1663..1924 | 100 | <- | Minus |
| arm_X | 10172125..10172263 | 1524..1662 | 100 | <- | Minus |
| arm_X | 10172326..10172550 | 1299..1523 | 100 | <- | Minus |
| arm_X | 10172612..10173224 | 686..1298 | 100 | <- | Minus |
| arm_X | 10201926..10202594 | 17..685 | 100 | | Minus |
BS19909.pep Sequence
Translation from 16 to 2070
> BS19909.pep
MCSRKCFRMPTLVICGVVLTIILVCITGITLTNSINISNIVKLREKVASD
SAAANGGHQAAQTRAALVEQQYSTLQQHHLSRSDLNYIQAATHPKNLQRQ
LQQQQQQQLQQQQPNKIVIEIGLSNDSGPSSAPASSTLGSSSTGPRILQA
AEALMEGNVDSISLPAAAPLTAATTSSAKSLENSQGSDTPHSHANTTNAD
ITMGIADHNPGGIQFERRAHVKQMMEHAWHNYKLYAWGKNELRPLSQRPH
SASIFGSYDLGATIVDGLDTLYIMGLEKEYREGRDWIERKFSLDNISAEL
SVFETNIRFVGGMLTLYAFTGDPLYKEKAQHVADKLLPAFQTPTGIPYAL
VNTKTGVAKNYGWASGGSSILSEFGTLHLEFAYLSDITGNPLYRERVQTI
RQVLKEIEKPKGLYPNFLNPKTGKWGQLHMSLGALGDSYYEYLLKAWLQS
GQTDEEAREMFDEAMLAILDKMVRTSPGGLTYVSDLKFDRLEHKMDHLAC
FSGGLFALGAATRQNDYTDKYMEVGKGITNTCHESYIRAPTQLGPEAFRF
SEAVEARALRSQEKYYILRPETFESYFVLWRLTHDQKYRDWGWEAVLALE
KHCRTAHGYCGLRNVYQQEPQKDDVQQSFFLAETLKYLYLLFSDDSVLPL
DEWVFNTEAHPLPIKGANAYYRQAPVTLPVSNAS*
BS19909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-PI | 684 | CG42275-PI | 1..684 | 1..684 | 3577 | 100 | Plus |
| alpha-Man-I-PP | 643 | CG42275-PP | 1..643 | 1..684 | 2612 | 76.2 | Plus |
| alpha-Man-I-PK | 643 | CG42275-PK | 1..643 | 1..684 | 2612 | 76.2 | Plus |
| alpha-Man-I-PO | 667 | CG42275-PO | 86..667 | 110..684 | 2498 | 84 | Plus |
| alpha-Man-I-PN | 667 | CG42275-PN | 86..667 | 110..684 | 2498 | 84 | Plus |
