BS19911.complete Sequence
1454 bp assembled on 2011-01-07
GenBank Submission: KX804971
> BS19911.complete
GAAGTTATCAGTCGACATGTTGCGACTGCCGACGATTTTAAGGAAGTCCT
TCAGCATGAAGACGCGCCAGAGGCTGGACTACCGCAACAAGCTCATACTG
GCGCCAATGGTGCGCGTGGGCACGCTGCCCATGCGACTGTTGGCCCTGGA
AATGGGTGCGGACATCGTTTACACCGAGGAGCTGGTGGACATCAAGCTGA
TCAAGAGCATACGCAGGCCGAACCCCGCTCTGGGCACGGTGGACTTTGTG
GATCCGTCGGATGGCACGATTGTGTTCCGCACCTGCGCCCAGGAAACCTC
ACGGCTGGTACTACAAATGGGCACCAGCGACGCTGGACGGGCTCTGGCCG
TGGGCAAGCTGCTGCAGCGCGACATTTCCGGTCTGGACATAAACATGGGC
TGTCCCAAGGAATTCTCCATCAAGGGCGGCATGGGCGCCGCCCTGCTCGC
TGATCCCGACAAGGCGGCACACATATTGCGCACTCTGTGCTCCGGCTTGG
ACATTCCAGTCACCTGCAAAATACGCATACTGCCGGACGTGGAGGGTACA
ATCGATCTGGTGCAGAAACTGGCCGCCACGGGCATCGCTGCCATTGGCAT
TCATGCGAGGACGCGCGACGAGCGTCCGCAGCATCCTGCCCATCCCGAGG
TACTGCGTGCCGTTGCCCAGGCGGTTGACATACCGATTATCGCCAACGGT
GGTTCGAAAAACATGCACTGCTACGATGATCTGCGCAAATTTCAAATGGA
ATGCGGCGCCGATAGCGTGATGGTCGCACGTGCGGCACAGATCAATGTTA
GCATCTTCAGGCCGGAGGGCCTGCTGCCCATGGACGAGCTAATCGAGAAG
TATCTGCGCCTGTGCGTCGACTACGACAATGCGCCGCATAACGCCAAGTA
CTGTGTGCAGAGCATACTCAGGGAGCTGCAGGAGACGCCGCGTGGCAAGC
GTTTCCTTCAGTGCCAGACGCTGCAGCAGATCTGCGAGATCTGGGAGCTG
GGCGACTATTGCCGCCGCAAGCAGCGGGAGCTAAAGACGATGGGCAACTC
GGGACGGGCGGAGGTGGAGCCACCGGAGGCGCTGGCCAAGCGACAGAAGC
TGGAGGATGCGGCCATTGCCATAACGGACGAGTACGACGGCATCATTTGC
CGACACATGCCATTCCTGCGCTCCACCTATCCCAGTGATAATCATCTGCC
GAAAACGCAACTATATGTGCATGCTGTCAAAACTGGCAAATCCCCGCCAG
CGTACGAAACGCAGCAGTGTGACAAATTGTTTCGCTCCATCTGCACGTAC
GATGGCCAGCGCTTTAGTAGCTCCTTCTGGGAGAAGAACAAGAAGCAGGC
AGAGCAGGGCGCCGCTCTGGTGGCCCTGCTCCATCTTGGCCAGCTGGAGG
CGGAGGTTCTGCGCGACAATGGCAGCCTGCTCAACTGAAAGCTTTCTAGA
CCAT
BS19911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1434-RB | 1422 | CG1434-PB | 1..1422 | 17..1438 | 7110 | 100 | Plus |
| CG1434-RA | 1422 | CG1434-PA | 1..1422 | 17..1438 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1434-RB | 2037 | CG1434-RB | 386..1808 | 16..1438 | 7115 | 100 | Plus |
| CG1434-RA | 1710 | CG1434-RA | 59..1481 | 16..1438 | 7115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14238643..14239609 | 225..1191 | 4820 | 99.9 | Plus |
| X | 23542271 | X | 14239672..14239923 | 1187..1438 | 1260 | 100 | Plus |
| X | 23542271 | X | 14238373..14238581 | 16..224 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:02 has no hits.
BS19911.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:29 Download gff for
BS19911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1434-RA | 391..1806 | 22..1437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:38 Download gff for
BS19911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1434-RA | 65..1480 | 22..1437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:52 Download gff for
BS19911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1434-RA | 65..1480 | 22..1437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:52 Download gff for
BS19911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14239673..14239922 | 1188..1437 | 100 | | Plus |
| X | 14238379..14238581 | 22..224 | 100 | -> | Plus |
| X | 14238643..14239605 | 225..1187 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:38 Download gff for
BS19911.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14132412..14132614 | 22..224 | 100 | -> | Plus |
| arm_X | 14132676..14133638 | 225..1187 | 100 | -> | Plus |
| arm_X | 14133706..14133955 | 1188..1437 | 100 | | Plus |
BS19911.pep Sequence
Translation from 16 to 1437
> BS19911.pep
MLRLPTILRKSFSMKTRQRLDYRNKLILAPMVRVGTLPMRLLALEMGADI
VYTEELVDIKLIKSIRRPNPALGTVDFVDPSDGTIVFRTCAQETSRLVLQ
MGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAALLADPDKA
AHILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTR
DERPQHPAHPEVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECGADS
VMVARAAQINVSIFRPEGLLPMDELIEKYLRLCVDYDNAPHNAKYCVQSI
LRELQETPRGKRFLQCQTLQQICEIWELGDYCRRKQRELKTMGNSGRAEV
EPPEALAKRQKLEDAAIAITDEYDGIICRHMPFLRSTYPSDNHLPKTQLY
VHAVKTGKSPPAYETQQCDKLFRSICTYDGQRFSSSFWEKNKKQAEQGAA
LVALLHLGQLEAEVLRDNGSLLN*
BS19911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1434-PB | 473 | CG1434-PB | 1..473 | 1..473 | 2446 | 100 | Plus |
| CG1434-PA | 473 | CG1434-PA | 1..473 | 1..473 | 2446 | 100 | Plus |
| CG3645-PC | 505 | CG3645-PC | 29..268 | 25..282 | 266 | 30 | Plus |
| CG3645-PB | 505 | CG3645-PB | 29..268 | 25..282 | 266 | 30 | Plus |
| CG3645-PA | 505 | CG3645-PA | 29..268 | 25..282 | 266 | 30 | Plus |
