BS19917.complete Sequence
3020 bp assembled on 2011-01-28
GenBank Submission: KX801356
> BS19917.complete
GAAGTTATCAGTCGACATGACCCGCGATGAGGATAATGGTTTTAGTGAAT
GGGGCGGCTACTTCGAAGCCAAGAAATCTAAACTTGAGGAGCAGTTCGCT
GCCGCCAGCGATCCATTTCGCAAGTCGGACCTCTTCCAAGGAATTTCTAT
ATTTGTGAACGGCCGGACTGACCCTTCGGCGGATGAACTGAAGCGTATTA
TGATGGTGCACGGCGGGACCTTTCACCACTACGAAAGGAGCCACACGACG
TACATAATAGCCTCCGTTCTGCCCGATGTGAAGGTCAGGAACATGAATCT
CAGCAAGTTCATCAGCGCCAAGTGGGTGGTGGATTGTCTGGAGAAAAAGA
AGATAGTAGACTACAAACCCTATCTGCTGTACACGAACCAGAAGACATCG
CAGCCCATGCTCATCTTTGGGAAACCCAAAGACAACGGCGCAAATGAGAG
CAAATCGGATGTGGAGCCGCCGAAAGATAAAGCGGAAGTGGAAGTAGACT
CTACAAAAGATGAAACGCAAATGGAGTTGGGTGGCATTCTCAAGAATTTG
CAGCAGGCTGTGGCCACTTCGCCGGAAAAGGAGGCCAGTGCATCAGAGAG
CAAGATCACAAACTTATCCACCACCTCGAATAACTCCACCACCGCTCGCA
CAGCCGCGGATCCAAATTTCTTAAGTGAATTCTATAAGAACTCACGACTG
CATCACATCGCCACTCTAGGCGCGGGTTTCAAGCAGTATGTCTGCCGGTT
GCGTCAGAAGCATGGTACCCAGGGCTTTCCCAAAAGAGAGACACTGAAGT
CCCTTGCTAATTCACACCACAATTGTTTGGAACGCTATGTGATGCACATT
GACATGGACTGCTTCTTTGTGTCCGTGGGCCTAAGAACCCGTCCTGAGCT
TCGTGGGCTGCCGATTGCGGTGACCCACTCGAAGGGAGGTAACGCAGCCA
CCGATGTACCGGTGCATCCGCAGGCGGACCGAAAGGCAGAGCTGGAACTC
TTTGCCCAGCGCTTCGAGCACCATTTCCACGATGGAGACAAGGCGGAAAA
GGTGCGCTCGGGCTTCGACAAGAAAATGTCGCTCTCGGAGATCGCCTCCT
GCAGCTACGAGGCGCGGGAAAAGGGTATCCGCAATGGCATGTTTGTGGGC
CAGGCCCTGAAGCTGTGCCCGGAGTTAAAGACGATTCCGTACGACTTCGA
AGGCTACAAGGAGGTGGCTTTCACTCTGTACGACACAGTGGCTCAGTATA
CCTTAAATATCGAGGCTGTGAGTTGCGACGAGATGTTTGTGGAGCTAACC
GATCTGGCACACGAACTCAATGTAGATGTGATGGCTTTTGTGAGTCACCT
CAGGCAGGAGGTTTACTCCAAAACGGGATGTCCGTGCTCAGCAGGAGTGG
CAGGCAACAAGTTGCTGGCGCGTATGGCCACCAAGGAGGCCAAGCCGAAT
GGCCAGTTCTTGTTGGATTCGAGCAATGATATTTTGGCCTATATGGCGCC
GATGTCTTTGGATTTACTGCCCGGTGTGGGCAGCAGCATAAGCCATAAGC
TCAAACAGGCGGGACTGAATAATTGTGGAGATGTTCAGAATACAACGTTG
GAGAAGATGGAAAAAGTGCTGGGCAAGAAACTTGGACAGAATTTGTTCCA
GAACTGCAGAGGAATTGATGATCGTCCTTTGGCTTACGAGCAGATCCGCA
AAACAGTTTCTGCCGAAATGAACTTTGGTATTCGCTTTACCAACTCGGTC
GAGTGCGAACAATTTCTGTGTCAGCTCAGCGAAGAGGTTACTAAGCGTCT
GGTTGAGATAAGGCGCAAAGCTAGATCGATTAATCTGAAGATAATGGTGC
GCGCCGCCGAAGCGCCAGTCGAAACCTCCAAGTACATGGGCCACGGAGTT
TGCGATATAATCAACAAGTCCTCTCTGATCAAATATGCCACGGATGATGT
AAATGTAATCACCACGGTGGTCCTCGACCTGATGAAAGACGCCGATATAC
CGCCCGACGAATTGCGTGGGCTAGGCATACATCTCACTAGGCTGGAGGAT
GCCAACGAAGTTCGGAAGGAGAACAATATCAAGGAGATGTTCGGCAAAAT
GTCCGAAATGAGGAAAGATAAACCAATACCCCAAGGAGCAGTTGGCGATA
AGTCCATAGGCGATGATAAAGTCAACAAACCACTCGTGTTTGAAAATAAA
CCTAAGCCCCGTGAGCCCAGGAATGTTTTGAGTATGCTCACGGCAGCAGC
GGTGAGCAGGAAATCGGTAACCGAAGACAGGAGTCAAAGAGGAACTTCAA
AGCCGATAACTCGGCCATTATCCCTTGTACCAAAACTTGATGAGGATGTT
TTGGCTCAGCTGCCGGAGGATATACGCCTCGAGGTGATTGCCAATAGGGA
GGAACACCTCTGCATTGCCGAGTACGATGGATATCGTTCTCCACAATATC
CGACCCTCCGCTCACCGCCTTTATTAAATCCATATGTCACCACCAATGTG
AGCCCGCTAAAGGCCACCGATCTTAAGCCATCGACTTCCCGGGCGGCTGT
GGCTAGATTGCAAAAGCGCAAGGAGCGCAAGGAGCAAGAGCATTACATCC
GATCGGATCAGATTGTGGCAGACTACATTGATGATCTGCCTGATTTCGTG
AATCCCCATATTCTGAAGCTCATCTCACATCCCGTGGAGATGCCCGAGCT
GCTGATGGGGGACAACTACAAGGACTTGCTGAACGATTGGGTCAGTCGCG
AGGAGGTGCCAAAGCCGAATGACGTGGATCTTATTCTCAAGCAGGTTTCT
CGTATGATTAAGAACGACCAATTGGACCACGTGTGCGATGTGATGAAGTA
TTGGTGCCGGATCATCAATATGAAACGCAGCAGCTCTTGCTGCTGGCACG
TGGCTTATAAGCACATTGAGGAGAGTATCCAGAACCAAATGCTTACGATT
GAGGGTTACAGTCTGTTATTCATTGAGTACATTCGTTGCATAAAGTGCTC
CTAAAAGCTTTCTAGACCAT
BS19917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rev1-RA | 2988 | CG12189-PA | 1..2988 | 17..3004 | 14940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rev1-RA | 3244 | CG12189-RA | 80..3067 | 17..3004 | 14940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 654535..655895 | 52..1412 | 6805 | 100 | Plus |
| 3L | 28110227 | 3L | 656896..657586 | 2170..2860 | 3455 | 100 | Plus |
| 3L | 28110227 | 3L | 656291..656716 | 1692..2117 | 2130 | 100 | Plus |
| 3L | 28110227 | 3L | 655948..656230 | 1411..1693 | 1415 | 100 | Plus |
| 3L | 28110227 | 3L | 657645..657794 | 2855..3004 | 735 | 99.3 | Plus |
| 3L | 28110227 | 3L | 656777..656832 | 2116..2171 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:44 has no hits.
BS19917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:01 Download gff for
BS19917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rev1-RA | 82..3067 | 17..3002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:34 Download gff for
BS19917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rev1-RA | 80..3065 | 17..3002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:37 Download gff for
BS19917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rev1-RA | 80..3065 | 17..3002 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:37 Download gff for
BS19917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 654442..654477 | 17..52 | 100 | -> | Plus |
| 3L | 654536..655893 | 53..1410 | 100 | -> | Plus |
| 3L | 655948..656230 | 1411..1693 | 100 | -> | Plus |
| 3L | 656293..656716 | 1694..2117 | 100 | -> | Plus |
| 3L | 656779..656832 | 2118..2171 | 100 | -> | Plus |
| 3L | 656898..657585 | 2172..2859 | 100 | -> | Plus |
| 3L | 657650..657792 | 2860..3002 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:34 Download gff for
BS19917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 654442..654477 | 17..52 | 100 | -> | Plus |
| arm_3L | 654536..655893 | 53..1410 | 100 | -> | Plus |
| arm_3L | 655948..656230 | 1411..1693 | 100 | -> | Plus |
| arm_3L | 656293..656716 | 1694..2117 | 100 | -> | Plus |
| arm_3L | 656779..656832 | 2118..2171 | 100 | -> | Plus |
| arm_3L | 656898..657585 | 2172..2859 | 100 | -> | Plus |
| arm_3L | 657650..657792 | 2860..3002 | 100 | | Plus |
BS19917.pep Sequence
Translation from 16 to 3003
> BS19917.pep
MTRDEDNGFSEWGGYFEAKKSKLEEQFAAASDPFRKSDLFQGISIFVNGR
TDPSADELKRIMMVHGGTFHHYERSHTTYIIASVLPDVKVRNMNLSKFIS
AKWVVDCLEKKKIVDYKPYLLYTNQKTSQPMLIFGKPKDNGANESKSDVE
PPKDKAEVEVDSTKDETQMELGGILKNLQQAVATSPEKEASASESKITNL
STTSNNSTTARTAADPNFLSEFYKNSRLHHIATLGAGFKQYVCRLRQKHG
TQGFPKRETLKSLANSHHNCLERYVMHIDMDCFFVSVGLRTRPELRGLPI
AVTHSKGGNAATDVPVHPQADRKAELELFAQRFEHHFHDGDKAEKVRSGF
DKKMSLSEIASCSYEAREKGIRNGMFVGQALKLCPELKTIPYDFEGYKEV
AFTLYDTVAQYTLNIEAVSCDEMFVELTDLAHELNVDVMAFVSHLRQEVY
SKTGCPCSAGVAGNKLLARMATKEAKPNGQFLLDSSNDILAYMAPMSLDL
LPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKVLGKKLGQNLFQNCRGI
DDRPLAYEQIRKTVSAEMNFGIRFTNSVECEQFLCQLSEEVTKRLVEIRR
KARSINLKIMVRAAEAPVETSKYMGHGVCDIINKSSLIKYATDDVNVITT
VVLDLMKDADIPPDELRGLGIHLTRLEDANEVRKENNIKEMFGKMSEMRK
DKPIPQGAVGDKSIGDDKVNKPLVFENKPKPREPRNVLSMLTAAAVSRKS
VTEDRSQRGTSKPITRPLSLVPKLDEDVLAQLPEDIRLEVIANREEHLCI
AEYDGYRSPQYPTLRSPPLLNPYVTTNVSPLKATDLKPSTSRAAVARLQK
RKERKEQEHYIRSDQIVADYIDDLPDFVNPHILKLISHPVEMPELLMGDN
YKDLLNDWVSREEVPKPNDVDLILKQVSRMIKNDQLDHVCDVMKYWCRII
NMKRSSSCCWHVAYKHIEESIQNQMLTIEGYSLLFIEYIRCIKCS*
BS19917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rev1-PA | 995 | CG12189-PA | 1..995 | 1..995 | 5174 | 100 | Plus |
