BS19924.complete Sequence
1691 bp assembled on 2011-01-28
GenBank Submission: KX804698
> BS19924.complete
GAAGTTATCAGTCGACATGTTTCGGTTTTCTCGCAATGCCATAACCCGGG
CGTGTAGTCTCTCCATTCGTCGGCCGGAGGTGATCCGTCATCGCAGGTAC
GCCTCGCAGGCGATCAACCAGATGCTGCAGCTGCAGCAGATGGAGATCTG
CGCGGATCCTCCGTCGCGTGGCTTGGTCGTTGGAGTCTACGCCGACGAGG
AGGACAAGAACGACGCTGGCATCCTGACGCCAACCGGCTGGAAGTACAAT
GTGCAGAAGACGCACGGTCGGTTGCTAGAAGTGCTGCGAATGTCCGGACC
CATGCCCAAAAGGGGAGAGACCCGCCTCCTGTTCGCCGTGGAGCCGGAGC
GCGTGCCCTACTATTCGGCGGTGGCAGTTATCGGTTTGGGTAAGGAATGC
CTGGGCTATAACCCATACGAGGTGCTCGACGAGCAGAAGGAGGCCATCCG
ACGGTCGGTAGCGGATGCCTGCCGAATACTCGCTGAACTGGACACCGACC
GCATCGAAGTAGAGAACTGTGGACACGCCGAATCTGCCGCGGAGGGAGCA
GCTCTCGGGATCTGGATCTACCAGGAGCTTCGCGATCCCAAGCGGCGAAT
CTCAGTGCCTTCCATCGATCTGTATGCCACTAAGGATGAGATTTGCGACA
TAGAAGGATGGCGTATCGGCCTGCAAAAGGCTGCCGCGCAGAACCTGACC
CGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCACTGCCTTTGC
CCAGAATGTCGTCGAAGTGCTTTGTAAGTCCGGCGTCAATGTAGAGGTCA
AAGTCGAGGGTTGGGCTGAGAGCCAGTCGATGCACGCCTTCTTGGCGGTG
GGAAAGGCCTCTTGCGAACCACCAATCTTTCTGGAGCTGAGCTACTACGG
CACCTGTGCCGAGGAGCGACCCATCGTCTTGGTTGGGCAGGGAGTGACTT
ACGATGCAGGTGGTTTGTGCTTAAAGGAGAAGCAGGAACTTTTCCACATG
CGCGGAGATATGACTGGTGCGGCCGTAGTGGTGGCCACTTGTCGTGCTGT
CGCTGGCCTGAGGTTACCGGTCAATATTCGTGGACTAATACCCCTGTGCG
AGAACGTTATTGGATGCAATTCCTTCCGTCCTGGAGACATGGTGAAATCC
ATGAATGGCAAGACCATTGAGGTGCAGTGCACCGACCACGAAGATGTTCT
AGTGCTGGCGGATGCCCTTCTGTACGGGCAGAACTTCTGTCCGAAGTGCA
TCATTGACATTGGCACCTGCTCGGGATATATGCGCCAAGCGTTGGATGAG
GCTGCCTGTGGGGTGTTTACCAACTCTGAGATCCTTTGGCAGCAGATCAA
GCACGCCAGCATGCACACTGGAGACCGCGTGTGGCGTTTCCCCCTGTGGA
ACTACTACAGCAAGGCGGTGCGTGCCGGTGGACGCAGTGATGTCCAGAAC
TACGGTATCGGTCGTGGTGGACGTCCTTGCAAAGCTGCCGCTTTCCTTCG
TGAATTTGTGCCTTGCGGCCAATGGATGCATATTGATGCCACCAACGTGA
TGATCACACGTGGTGATGAGTTCGAGTATCTGCGAGAGGGCATGGCCGGA
CGTCCAACAAGGACACTCATCGAGTTTATTGCACAGTCCATATGCAAGGA
CACAGCTCCAAAGCTTAACAAGTGAAAGCTTTCTAGACCAT
BS19924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap2-RA | 1659 | CG32351-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
| S-Lap1-RA | 1668 | CG6372-PA | 91..1656 | 98..1663 | 4230 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap2-RA | 2093 | CG32351-RA | 257..1916 | 17..1676 | 8300 | 100 | Plus |
| S-Lap1-RA | 2121 | CG6372-RA | 293..1858 | 98..1663 | 4230 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8620144..8621198 | 17..1071 | 5275 | 100 | Plus |
| 3L | 28110227 | 3L | 8617527..8618485 | 98..1056 | 2590 | 84.7 | Plus |
| 3L | 28110227 | 3L | 8621251..8621717 | 1069..1535 | 2335 | 100 | Plus |
| 3L | 28110227 | 3L | 8618555..8619021 | 1069..1535 | 1480 | 87.8 | Plus |
| 3L | 28110227 | 3L | 8621773..8621914 | 1535..1676 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:32:00 has no hits.
BS19924.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:00 Download gff for
BS19924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32351-RA | 263..1914 | 23..1674 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:15 Download gff for
BS19924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap2-RA | 263..1914 | 23..1674 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:20 Download gff for
BS19924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap2-RA | 263..1914 | 23..1674 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:20 Download gff for
BS19924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8620150..8621196 | 23..1069 | 100 | -> | Plus |
| 3L | 8621252..8621716 | 1070..1534 | 100 | -> | Plus |
| 3L | 8621773..8621912 | 1535..1674 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:15 Download gff for
BS19924.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8613250..8614296 | 23..1069 | 100 | -> | Plus |
| arm_3L | 8614352..8614816 | 1070..1534 | 100 | -> | Plus |
| arm_3L | 8614873..8615012 | 1535..1674 | 100 | | Plus |
BS19924.pep Sequence
Translation from 16 to 1674
> BS19924.pep
MFRFSRNAITRACSLSIRRPEVIRHRRYASQAINQMLQLQQMEICADPPS
RGLVVGVYADEEDKNDAGILTPTGWKYNVQKTHGRLLEVLRMSGPMPKRG
ETRLLFAVEPERVPYYSAVAVIGLGKECLGYNPYEVLDEQKEAIRRSVAD
ACRILAELDTDRIEVENCGHAESAAEGAALGIWIYQELRDPKRRISVPSI
DLYATKDEICDIEGWRIGLQKAAAQNLTRQLQEMPSNLLTPTAFAQNVVE
VLCKSGVNVEVKVEGWAESQSMHAFLAVGKASCEPPIFLELSYYGTCAEE
RPIVLVGQGVTYDAGGLCLKEKQELFHMRGDMTGAAVVVATCRAVAGLRL
PVNIRGLIPLCENVIGCNSFRPGDMVKSMNGKTIEVQCTDHEDVLVLADA
LLYGQNFCPKCIIDIGTCSGYMRQALDEAACGVFTNSEILWQQIKHASMH
TGDRVWRFPLWNYYSKAVRAGGRSDVQNYGIGRGGRPCKAAAFLREFVPC
GQWMHIDATNVMITRGDEFEYLREGMAGRPTRTLIEFIAQSICKDTAPKL
NK*
BS19924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap2-PA | 552 | CG32351-PA | 1..552 | 1..552 | 2913 | 100 | Plus |
| S-Lap1-PA | 555 | CG6372-PA | 1..555 | 1..552 | 2637 | 89.1 | Plus |
| S-Lap8-PA | 534 | CG4439-PA | 50..534 | 51..544 | 985 | 41.2 | Plus |
| S-Lap5-PA | 549 | CG18369-PA | 61..548 | 51..546 | 985 | 42.1 | Plus |
| S-Lap3-PD | 535 | CG32063-PD | 47..532 | 51..545 | 950 | 39.7 | Plus |
