BS19925.complete Sequence
2879 bp assembled on 2011-02-17
GenBank Submission: KX800466
> BS19925.complete
GAAGTTATCAGTCGACATGAGTCGAAAGGGAACACGAGAACAAAATGATA
TATCGCTGATAATTGGGACGCTGCCGAAACGCCTGCAGAACAAAATCGCG
GCCAGCTGCAGCCACGCAGCAGCAGCGGCAACAACAACAAAGGCGTTGGA
GACGGAAAACGCTGAGAATGCGGAGCCCGTGGCTACGACAGCAAATGCTT
CAAGGCCAGTCGAAATCCTGAGCAATGCTAGCACAGGAGGAGGCAAACCC
GATGCCCAGTCAAAGCAACCCGTTTTGGATACCAGCGGGAAAATGGCGTG
GGAGGGCGGGATTCCAGGCATCCTGCGCGTGACCACCTCGGTGGCGGGCG
ATGTTAACAGGAACGGACAGGGTCAGGGCAAGAACAAGAGCGGTAACAGT
GCTCGGCGCAGGGGTCGCAAGGACAAGGAGCACGCTACGCAGTCGCCAGT
GACGCGCACGCGCTTGACCACCGAGCATCCGGATTGGTTTGAGCCGCTGT
TGGGTCTGCCCCATGCCAAGAATATAGTCCATCTGTACGATCAGCTCATG
GTCCTCAATCAGAGGAATCTCATACTGATAAACTGGAAGAACTTCTGCTA
CATTCACGACCAGCTGCAGGACGCTTTCAAGCAACTTCTTTTGGAGCAAC
TTAAGTTCGTGTGCGAGCACAAGGTTGATGTCTTCTTTTGGAAACTACTC
TTCTACAATGTGCGGAATTACTTGAAGCGCCAGCAAACGGACCAGGCGCA
CACACATACGCTCCTTTTGATTGAACAGGCCATTAAGTTTTACCGCATGC
TCTACGACAAGCTGATGGCCAAGTGCGTGGCATCGTCGCGCTGTGACAGC
GCACTTAAAGTGGTGGCCCAGAGGCTGCTCATCTGTTTGGGCGATCTGAC
GCGCTACCGGGTTAACCATGTCAAGGCCACAGATTACATGGAGGCGGCCA
GGTACTATCAGAGGGCGCAGGAACTGGTACCTGGCAACGGGGCACCTTTC
AACCAGCTGGCGGTCATTTCCATTTATCACCACAAGCGCTTCGATGCAGT
TTATTACTATGTCCGCAGCTTGTTGACTTCGAACTCTATCCAATCTGCCA
AGGAAAGCCTGCTGGATTTGTTCGACGAGATTCGGCGTAAGTACGAGGAG
ACCGAGATGAAGCAATCTCCCATGCACTATGCAGCTGGATCGAAGAATCA
AAAGTCGAAGCAGATGCGCAAGGAGGTATGGATCTATCCGGATGGGATCA
GACGCCTACATCGCACCGATGACAAGGGCAACAAGGCGAAGGGCAACAAG
GCCACTATGGCAGAGGTCAATCGTTACGAGGAGATGCCGCCGGAGGAGAT
TCTTCCTCGCATTGTTTCCCTTTATCTGTACTTATTAGGCAAACTCTACA
CCGGCACAGATGTGGACTCGTTATACCCGTTGCTAAGGAAACTGCAAATC
CAAATAGGCGTCGCTTTAAGGCACGAAAACCTGTTGTCACGCTCCAAACT
GCTGAAAATAGTAGCACTCAACTTGTTCGTCGTCGAGCACAACAAACCCA
AAACGTCACGCCGCGAGATGCGTTATCACAGCTTCAATTTTGCCAACTCA
TTCTTTGGACTCATGATGAAGAAAACGAACCAGCTGCTGGCTGGTTTTGT
AGAGGATTCTACAAATGTCCAGTGTCTCCCAGAAGAAGACTTTGCGACTG
TGAACACATACCTACAGTTCGTGAATGTTTATGTACGTTGGTTGAGCATC
AGTTTGGACGTGTGGGAACCCGTCAGATCGGAAGAACACTCTTTCATCGA
TTGCTGGGCTGAGCTAACAATCCTTTTTGAGTACATTGAATGCTTAATGG
GGAAGCACAAACTTGAGAAAAACGAAATACTGTTGGATGAGGATGTGGCC
CTTAGAGGTTTCACTCCGTTGGGTCGTGAAACGCTGAGCATGGACTATCT
CAAAAGAGGATCCGAACGTCTTCAGTTTTTCGAACGTGTTCGTAGGATTG
GTCAGTTCCAGGAATACTACGTCCAGCATCAAGAGGCTCTCCAGCAGCCG
TTGGAATCAAGCTTCACTGTCGAGCACCTAAACGCAGCGATGAAGAACGC
ATTGGAAAACTATGATGCTGAAAGTTGTGGTCTTGCGGCGAACGTTTCAA
AGATTCAATGTAAAGCCGTTGAGGAATTGTTGTGTCGTTCAACTGATTCC
GATGTTTCCGAGCTGTGCAAGCTGAAGAAAGAGCTTGAGGCCAAGGCTAG
GGTTAAGCAGATATGCACCAGCAAGTTGGAGGACATTCTCAAGTTCGTGG
ACACGAAAATATACATCGAGGTGCGACCGCGCTATCTTCTACCGGATACC
AACTGCTTTATCGACTGCCTTGAAGACTTTGAAAAACTGTCCACGGAGTT
TAAACGCTACACACTTATTATACCACTGACAGTGGTTAAGGAACTGGATG
GCCTCTCCAAGGGCGTTAAGTTGGACTCGTACCGCAGTTCGAAGCAGACG
CAGCGCATCCACCACTTTGACGAGGTGTCGTCGCGGGCCAAAAAGTCGTT
AGAGTTCATCAAGTCGGCCAAAGGCAATGTGAAATGTGCTACCACAAAGG
GCTCGTTTGTCAATGCATCGGTGTTTGCCCTAGTTGAGGAGGAATATTTG
TCCAATGACGACAAGATTCTGGCAACGGCAATGGCTGTCTCGAAAACGGC
AAAAACCGAACAATGCACAGATGGCAAGTGTTTCATTCAAACGGAATTGG
TGCTCATTACAACCGATCGTAATCTGCGTGTGAAGGCTCTTTCTCGCAAT
TTGGCCGTCAGCGCGTTGGATGAGTTTCTGCAATGGGCCAAGGATTGCCG
CGAATCAACCTGAAAGCTTTCTAGACCAT
BS19925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg6-RA | 2847 | CG6369-PA | 1..2847 | 17..2863 | 14235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg6-RA | 3310 | CG6369-RA | 114..2964 | 17..2867 | 14255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25030356..25031153 | 2583..1786 | 3990 | 100 | Minus |
| 3R | 32079331 | 3R | 25032211..25032660 | 1030..581 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 25031769..25032148 | 1410..1031 | 1900 | 100 | Minus |
| 3R | 32079331 | 3R | 25032727..25033100 | 580..207 | 1870 | 100 | Minus |
| 3R | 32079331 | 3R | 25033160..25033352 | 209..17 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 25029775..25029924 | 2867..2718 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 25031551..25031693 | 1553..1411 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 25029982..25030118 | 2720..2584 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 25031359..25031494 | 1689..1554 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 25031208..25031303 | 1785..1690 | 480 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2426..2481 | 87..144 | 150 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2437 | 70..145 | 121 | 67.9 | Plus |
BS19925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:26 Download gff for
BS19925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg6-RA | 104..2949 | 17..2862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:12 Download gff for
BS19925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg6-RA | 114..2959 | 17..2862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:46 Download gff for
BS19925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg6-RA | 114..2959 | 17..2862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:46 Download gff for
BS19925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25029780..25029921 | 2721..2862 | 100 | <- | Minus |
| 3R | 25029982..25030118 | 2584..2720 | 100 | <- | Minus |
| 3R | 25030356..25031153 | 1786..2583 | 100 | <- | Minus |
| 3R | 25031208..25031303 | 1690..1785 | 100 | <- | Minus |
| 3R | 25031359..25031494 | 1554..1689 | 100 | <- | Minus |
| 3R | 25031551..25031693 | 1411..1553 | 100 | <- | Minus |
| 3R | 25031769..25032148 | 1031..1410 | 100 | <- | Minus |
| 3R | 25032211..25032660 | 581..1030 | 100 | <- | Minus |
| 3R | 25032727..25033097 | 210..580 | 100 | <- | Minus |
| 3R | 25033160..25033352 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:12 Download gff for
BS19925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20857273..20857415 | 1411..1553 | 100 | <- | Minus |
| arm_3R | 20855502..20855643 | 2721..2862 | 100 | <- | Minus |
| arm_3R | 20855704..20855840 | 2584..2720 | 100 | <- | Minus |
| arm_3R | 20856078..20856875 | 1786..2583 | 100 | <- | Minus |
| arm_3R | 20856930..20857025 | 1690..1785 | 100 | <- | Minus |
| arm_3R | 20857081..20857216 | 1554..1689 | 100 | <- | Minus |
| arm_3R | 20857491..20857870 | 1031..1410 | 100 | <- | Minus |
| arm_3R | 20857933..20858382 | 581..1030 | 100 | <- | Minus |
| arm_3R | 20858449..20858819 | 210..580 | 100 | <- | Minus |
| arm_3R | 20858882..20859074 | 17..209 | 100 | | Minus |
BS19925.pep Sequence
Translation from 16 to 2862
> BS19925.pep
MSRKGTREQNDISLIIGTLPKRLQNKIAASCSHAAAAATTTKALETENAE
NAEPVATTANASRPVEILSNASTGGGKPDAQSKQPVLDTSGKMAWEGGIP
GILRVTTSVAGDVNRNGQGQGKNKSGNSARRRGRKDKEHATQSPVTRTRL
TTEHPDWFEPLLGLPHAKNIVHLYDQLMVLNQRNLILINWKNFCYIHDQL
QDAFKQLLLEQLKFVCEHKVDVFFWKLLFYNVRNYLKRQQTDQAHTHTLL
LIEQAIKFYRMLYDKLMAKCVASSRCDSALKVVAQRLLICLGDLTRYRVN
HVKATDYMEAARYYQRAQELVPGNGAPFNQLAVISIYHHKRFDAVYYYVR
SLLTSNSIQSAKESLLDLFDEIRRKYEETEMKQSPMHYAAGSKNQKSKQM
RKEVWIYPDGIRRLHRTDDKGNKAKGNKATMAEVNRYEEMPPEEILPRIV
SLYLYLLGKLYTGTDVDSLYPLLRKLQIQIGVALRHENLLSRSKLLKIVA
LNLFVVEHNKPKTSRREMRYHSFNFANSFFGLMMKKTNQLLAGFVEDSTN
VQCLPEEDFATVNTYLQFVNVYVRWLSISLDVWEPVRSEEHSFIDCWAEL
TILFEYIECLMGKHKLEKNEILLDEDVALRGFTPLGRETLSMDYLKRGSE
RLQFFERVRRIGQFQEYYVQHQEALQQPLESSFTVEHLNAAMKNALENYD
AESCGLAANVSKIQCKAVEELLCRSTDSDVSELCKLKKELEAKARVKQIC
TSKLEDILKFVDTKIYIEVRPRYLLPDTNCFIDCLEDFEKLSTEFKRYTL
IIPLTVVKELDGLSKGVKLDSYRSSKQTQRIHHFDEVSSRAKKSLEFIKS
AKGNVKCATTKGSFVNASVFALVEEEYLSNDDKILATAMAVSKTAKTEQC
TDGKCFIQTELVLITTDRNLRVKALSRNLAVSALDEFLQWAKDCREST*
BS19925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg6-PA | 948 | CG6369-PA | 1..948 | 1..948 | 4886 | 100 | Plus |
