BS19932.complete Sequence
1364 bp assembled on 2012-04-25
GenBank Submission: KX800658
> BS19932.complete
GAAGTTATCAGTCGACATGGCAAAAGTAGCTGAGGAGAATGATCATCGTG
ATCTAAGTAATTGGTCGAATGTGAACGACACCAATGGCACCATTCACCTG
ACCAAGGATATGGTCTTCAATGATGGCCACCGATTGTCCATCACCGTGTA
CAGCATACTGTTTGTGATCTCAACAATTGGCAACAGCACCGTGCTGTATC
TGCTGACCAAGCGGCGACTGCGCGGTCCCTTGCGTATTGATATCATGCTA
ATGCATCTGGCCATCGCCGATCTAATGGTGACGCTGCTCCTGATGCCAAT
GGAGATCGTGTGGGCCTGGACGGTGCAGTGGCTATCCACGGACCTGATGT
GCCGCCTGATGAGCTTTTTCCGCGTCTTTGGCCTGTATCTGTCCAGCTAC
GTGATGGTCTGCATATCGCTCGACAGATACTTTGCCATACTGAAGCCGCT
CAAGCGGTCCTACAACCGGGGACGCATCATGCTGGCCTGCGCCTGGCTGG
GATCAGTCGTCTGCAGCATTCCACAGGCCTTTCTCTTCCATCTGGAGGAG
CATCCCGCCGTCACCGGCTACTTTCAGTGCGTCATCTTCAACTCGTTCAG
GAGCGACTTTGATGAGAAGCTGTATCAGGCGGCCTCCATGTGCAGCATGT
ACGCCTTTCCGCTGATCATGTTCATCTACTGCTACGGAGCCATTTACCTG
GAGATCTATCGGAAGAGCCAGCGCGTCCTCAAGGACGTGATTGCCGAGCG
TTTCCGGCGTTCCAACGACGACGTGCTCAGCCGGGCCAAGAAGCGCACGC
TCAAAATGACCATCACGATTGTGATTGTGTTCATCATCTGCTGGACTCCG
TACTACACCATCTCCATGTGGTACTGGCTGGACAAGCACTCCGCGGGCAA
GATCAATCCCCTGCTGCGCAAGGCGCTGTTCATCTTCGCCTCGACCAACT
CATGTATGAATCCATTGGTCTACGGACTCTACAACATTCGCGGGCGAATG
AACAACAACAATCCGTCGGTGAACAACAGGCACACCTCGCTGTCCAATCG
CCTGGACTCCTCCAATCAGCTGATGCAAAAGCAGTTGACCAACAACTCGC
TGCTGAATGGAAGAGGCCAGGTGATGGCAGCCGCGGTTTCAGCCACCACT
AAGTTGGCCAATGTGGTCAGCCTTAAAGGCACTGCCAATGGCAATGGCTC
AGCTGCAGCCGCGGGAACAGTTCCAATAACTCCTCCGCTGACAGTAACCA
TCGCTCCGCTGGCCACCGACGACGAGGCCAACGATGATTCCTGTCTCAGT
GCGGTCACCATCAGGTGCCAGGATCAATCCCCGATCCGCCAGAAGTAAAA
GCTTTCTAGACCAT
BS19932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AkhR-RD | 1332 | CG11325-PD | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| AkhR-RB | 1332 | CG11325-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| AkhR-RA | 1332 | CG11325-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AkhR-RD | 2587 | CG11325-RD | 794..2125 | 17..1348 | 6660 | 100 | Plus |
| AkhR-RB | 2781 | CG11325-RB | 393..1724 | 17..1348 | 6660 | 100 | Plus |
| AkhR-RA | 2031 | CG11325-RA | 238..1569 | 17..1348 | 6660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6712740..6713231 | 1015..524 | 2460 | 100 | Minus |
| 2L | 23513712 | 2L | 6712343..6712676 | 1348..1015 | 1670 | 100 | Minus |
| 2L | 23513712 | 2L | 6713575..6713850 | 426..151 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 6714555..6714691 | 153..17 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 6713365..6713468 | 527..424 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:50:37 has no hits.
BS19932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:16:49 Download gff for
BS19932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GRHR-RB | 235..1564 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:36 Download gff for
BS19932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AkhR-RA | 238..1567 | 17..1346 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:03 Download gff for
BS19932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AkhR-RA | 238..1567 | 17..1346 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:03 Download gff for
BS19932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6713366..6713465 | 427..526 | 100 | <- | Minus |
| 2L | 6713575..6713847 | 154..426 | 100 | <- | Minus |
| 2L | 6714555..6714691 | 17..153 | 100 | | Minus |
| 2L | 6712345..6712675 | 1016..1346 | 100 | <- | Minus |
| 2L | 6712740..6713228 | 527..1015 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:36 Download gff for
BS19932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6712345..6712675 | 1016..1346 | 100 | <- | Minus |
| arm_2L | 6712740..6713228 | 527..1015 | 100 | <- | Minus |
| arm_2L | 6713366..6713465 | 427..526 | 100 | <- | Minus |
| arm_2L | 6713575..6713847 | 154..426 | 100 | <- | Minus |
| arm_2L | 6714555..6714691 | 17..153 | 100 | | Minus |
BS19932.pep Sequence
Translation from 16 to 1347
> BS19932.pep
MAKVAEENDHRDLSNWSNVNDTNGTIHLTKDMVFNDGHRLSITVYSILFV
ISTIGNSTVLYLLTKRRLRGPLRIDIMLMHLAIADLMVTLLLMPMEIVWA
WTVQWLSTDLMCRLMSFFRVFGLYLSSYVMVCISLDRYFAILKPLKRSYN
RGRIMLACAWLGSVVCSIPQAFLFHLEEHPAVTGYFQCVIFNSFRSDFDE
KLYQAASMCSMYAFPLIMFIYCYGAIYLEIYRKSQRVLKDVIAERFRRSN
DDVLSRAKKRTLKMTITIVIVFIICWTPYYTISMWYWLDKHSAGKINPLL
RKALFIFASTNSCMNPLVYGLYNIRGRMNNNNPSVNNRHTSLSNRLDSSN
QLMQKQLTNNSLLNGRGQVMAAAVSATTKLANVVSLKGTANGNGSAAAAG
TVPITPPLTVTIAPLATDDEANDDSCLSAVTIRCQDQSPIRQK*
BS19932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AkhR-PD | 443 | CG11325-PD | 1..443 | 1..443 | 2301 | 100 | Plus |
| AkhR-PC | 455 | CG11325-PC | 1..443 | 1..443 | 2301 | 100 | Plus |
| AkhR-PB | 443 | CG11325-PB | 1..443 | 1..443 | 2301 | 100 | Plus |
| AkhR-PA | 443 | CG11325-PA | 1..443 | 1..443 | 2301 | 100 | Plus |
| CrzR-PA | 579 | CG10698-PA | 120..513 | 40..398 | 432 | 28.6 | Plus |
