BS19933.complete Sequence
797 bp assembled on 2011-01-07
GenBank Submission: KX801855
> BS19933.complete
GAAGTTATCAGTCGACATGCGACGACGTGTAGGCCTGGGAGCCATACAGC
AGCAGAAGCTGGCTGCGGAGAAGTACAAGGACAAGGGCACCGATCTGCAG
GAAAACCAACTCGAACAGATGACCAAGCAAATGGAGGTATTCCGGGTGAA
ACTCGAGGAATTTGCGATGAAACACAAGGAGGACATACGCAAGAATTCGC
AGTTCCGCAAACAGTTTCAGGAAATGTGCGCCGCCATCGGCGTGGATCCG
CTGGCCACCGGTAAAGGATTCTGGAGCGTTCTGGGAATGGGCGATTTCTA
CTACGAACTGGGCGTCCAGGTGGTGGAGGTTTGTCTAGCTGCCAATCACA
AAACCGGTGGACTTATGGAGCTGGACGATCTGCGACGTCGGCTAATCGCC
GCCAGAGGTCAGAGTTCAGTGCACCAGGAGATCACCAAGGAGGACATCCT
AATGGCCGCTAAGAAATTGAGCATTTTTGGCAACGGCTTTGTGGTTCACA
AGCTGGGCAAGGGCAAGTACATAGTTCAGTCCATTCCCGGAGAGCTGAGC
ATGGAGGAGACCAACATACTGAATGCCGCATCCAATACCGAACAAGGCTG
TGTTACGCAGAGTCAGCTGATCAAGGATTTGGGCTGGACCGACTATCGTG
CTCAACAGTCACTGGACAAGGTGCTCGGCGAAGGTCTCTGTTGGATTGAC
AAGCAGGCGGGCGATGAGCCAGCCTATTGGTTTCCCAGTTTGTTTCCCGG
TCGAAACGCACAGACAACGGCCGCCACATAGAAGCTTTCTAGACCAT
BS19933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-RA | 765 | CG6637-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-RA | 941 | CG6637-RA | 111..875 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21865278..21865747 | 17..486 | 2350 | 100 | Plus |
| 3R | 32079331 | 3R | 21866024..21866172 | 633..781 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 21865814..21865961 | 486..633 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:26:31 has no hits.
BS19933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:43 Download gff for
BS19933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 79..843 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:57 Download gff for
BS19933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 111..875 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:23 Download gff for
BS19933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lsn-RA | 111..875 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:23 Download gff for
BS19933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21865278..21865747 | 17..486 | 100 | -> | Plus |
| 3R | 21865815..21865961 | 487..633 | 100 | -> | Plus |
| 3R | 21866025..21866172 | 634..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:57 Download gff for
BS19933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17691000..17691469 | 17..486 | 100 | -> | Plus |
| arm_3R | 17691537..17691683 | 487..633 | 100 | -> | Plus |
| arm_3R | 17691747..17691894 | 634..781 | 100 | | Plus |
BS19933.pep Sequence
Translation from 16 to 780
> BS19933.pep
MRRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFA
MKHKEDIRKNSQFRKQFQEMCAAIGVDPLATGKGFWSVLGMGDFYYELGV
QVVEVCLAANHKTGGLMELDDLRRRLIAARGQSSVHQEITKEDILMAAKK
LSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGCVTQSQ
LIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPSLFPGRNAQT
TAAT*
BS19933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lsn-PA | 254 | CG6637-PA | 1..254 | 1..254 | 1315 | 100 | Plus |
