BS19938.complete Sequence
1811 bp assembled on 2011-01-07
GenBank Submission: KX805367
> BS19938.complete
GAAGTTATCAGTCGACATGCGCTGCCTGGCATTGAGCGCAGTGTTTTTGT
GCCTGACTCTGGCCGGGCACTTTCATTTGTCAGATGCCTACAAGAACGAG
GTACAGATCACCCCGGATCCGCTAGACGCGGTGGAGACGACAACCAAGAA
GTCCAGCTGGTTTGGTGGATTCAAGAAGTTCTTTGGCAGCGATGGCACTA
CAACTACCACCAGCACGATTGCTCCACCGGTGGTCACCAGTCCGAAATCG
GTGGTGGTTACACCCACGGCAGCCAACAAGCCACCGCCACTGGTCATCTC
GCATGCTCCATTGATGCCGCTGGGACCGCGACCCGATACGCCGGGATCGT
CACCTTTCGGCGCATCCCAAAATCCTCAAACGCCACCTCAGTGGCCATCG
AGCACCAGAGCAACGCCATCGCATCCATCGCAACCCTCGCAGCCATCTCA
GCAGCCACCTCTGCCTGGTTTCGCCTCCTATCGGCCACAGAAACCGCAGC
CGAATAGCTACGATCTTAGCTACGGTGGCGGTCCACAACCGGCACCAGCA
GGAACAGGACGTCCTGGTTTTGGACTGGGCATAAGCAGCACTACGAGCAC
CACGACCACCGCGAAGCCCATCACCAGCACCACAGGTAAGACACCGCAGC
AGAAGGAGGATTTCCCGGCACTGCCAGGACCTCGGCGGCCGTCCCAAAAA
GAGGACTTCCCAGCTCTGCCCGCGCCCAAAACTCCACCAGGCTCGCCAAC
GCCTACACCGGGATCTCCTTCGGCTTGGCAATCACCGTTGCCAACGCCCC
AGCATCCTGTGCATCCGCCCACTAAGGCTACTTCGGCGGCCACGCCTACC
CCGACACCAACGCCCTCGTTCTCTTCCTCGGTAACGCCCACTCCCGCTCA
CGGATCGTCTGTGGGACCACACAAGGACGGAGGTGGAGGTGGTGGAGGCG
GCACAACTACTGTGCGACCCGGTTTCCAGTCGTCGGGCAACTCGGTGGCC
ACTGATGACGAAATCCGCCAGCTGACGGAGCTACTGTACACCAAGGAGAG
CAACAGCCAGATCGGTAACATCCAAGTGAATCTGCAGGGACGCACGCGTT
CCATCGACAGCGCAGATGAGGCACCCAATCCACTTTTGACTGTGGACTCG
AAAGCCCTTGAATCCCCGACGATCGTCAAGATGCGGCTGCTGTTCAACAA
CTACGAGCACGACACCCATGTCAACGAGCATGTGACGCCCAACGAGCGCA
AGGAGGAGAATGACTTTCTGGACGCAGTGATGGCCACGCCGGTGATGCGA
CAGGCCATGCTCTTCCTCCAACAAAAGGGAGTCGTCAGTCCCGATCCAAA
GACCCACCGCGATCTGGTCAAGGAGCTGTGGTTCACACAGTACTCGCGCG
GTCAGGGCAAGATCGGCAGTTCCGGCTTCGAGCACGTCTTTGTCTACGAG
GTGAAGGACGGCACCATTATCGGATTCCACAACTGGGTCTATATTGGCGA
TGAGGAAAAGGACGGTCGCTTTGACTACAAGGGATATATGAAGGAGCAGG
ACATTGGCACGAAGGGAAAAATCGTAAAGATCCGTTTCTCGCATCAGGGA
CTCAATAAGCCAGTGAATACTGTGTTTGTGGGCACCTCTCCGGAACTGGA
GCTCGCCCTGTACACCGTCTGCTTCCAGCTACGACCGGATCGCACCTGTC
CAGTGTCCTTGGGCAATAGCAAGTTCGGCATTGTCACCTATTCGTGGCGC
TACCGGGGAAAGAACCTCATTGGCAGCGCCTATCCGGAGATTTGAAAGCT
TTCTAGACCAT
BS19938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2145-RB | 1779 | CG2145-PB | 1..1779 | 17..1795 | 8880 | 99.9 | Plus |
| CG2145-RA | 1779 | CG2145-PA | 1..1779 | 17..1795 | 8880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2145-RB | 1988 | CG2145-RB | 123..1901 | 17..1795 | 8880 | 99.9 | Plus |
| CG2145-RA | 2045 | CG2145-RA | 180..1958 | 17..1795 | 8880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10927710..10928759 | 82..1131 | 5235 | 99.9 | Plus |
| X | 23542271 | X | 10928837..10929266 | 1132..1561 | 2150 | 100 | Plus |
| X | 23542271 | X | 10929391..10929625 | 1561..1795 | 1175 | 100 | Plus |
| X | 23542271 | X | 10927578..10927644 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:21:22 has no hits.
BS19938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:25 Download gff for
BS19938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 180..1957 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:55 Download gff for
BS19938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 180..1957 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:26 Download gff for
BS19938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 180..1957 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:26 Download gff for
BS19938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10927578..10927644 | 17..83 | 100 | -> | Plus |
| X | 10927712..10928759 | 84..1131 | 99 | -> | Plus |
| X | 10928837..10929266 | 1132..1561 | 100 | -> | Plus |
| X | 10929392..10929624 | 1562..1794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:55 Download gff for
BS19938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10821611..10821677 | 17..83 | 100 | -> | Plus |
| arm_X | 10821745..10822792 | 84..1131 | 99 | -> | Plus |
| arm_X | 10822870..10823299 | 1132..1561 | 100 | -> | Plus |
| arm_X | 10823425..10823657 | 1562..1794 | 100 | | Plus |
BS19938.pep Sequence
Translation from 16 to 1794
> BS19938.pep
MRCLALSAVFLCLTLAGHFHLSDAYKNEVQITPDPLDAVETTTKKSSWFG
GFKKFFGSDGTTTTTSTIAPPVVTSPKSVVVTPTAANKPPPLVISHAPLM
PLGPRPDTPGSSPFGASQNPQTPPQWPSSTRATPSHPSQPSQPSQQPPLP
GFASYRPQKPQPNSYDLSYGGGPQPAPAGTGRPGFGLGISSTTSTTTTAK
PITSTTGKTPQQKEDFPALPGPRRPSQKEDFPALPAPKTPPGSPTPTPGS
PSAWQSPLPTPQHPVHPPTKATSAATPTPTPTPSFSSSVTPTPAHGSSVG
PHKDGGGGGGGGTTTVRPGFQSSGNSVATDDEIRQLTELLYTKESNSQIG
NIQVNLQGRTRSIDSADEAPNPLLTVDSKALESPTIVKMRLLFNNYEHDT
HVNEHVTPNERKEENDFLDAVMATPVMRQAMLFLQQKGVVSPDPKTHRDL
VKELWFTQYSRGQGKIGSSGFEHVFVYEVKDGTIIGFHNWVYIGDEEKDG
RFDYKGYMKEQDIGTKGKIVKIRFSHQGLNKPVNTVFVGTSPELELALYT
VCFQLRPDRTCPVSLGNSKFGIVTYSWRYRGKNLIGSAYPEI*
BS19938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2145-PB | 592 | CG2145-PB | 1..592 | 1..592 | 3177 | 100 | Plus |
| CG2145-PA | 592 | CG2145-PA | 1..592 | 1..592 | 3177 | 100 | Plus |
| CG3303-PA | 322 | CG3303-PA | 53..320 | 329..591 | 561 | 42.8 | Plus |
| CG34220-PA | 726 | CG34220-PA | 339..556 | 61..292 | 220 | 28.8 | Plus |
| CG15021-PA | 420 | CG15021-PA | 179..403 | 70..313 | 191 | 30.7 | Plus |
| CG34220-PA | 726 | CG34220-PA | 170..398 | 61..293 | 187 | 26.1 | Plus |
