BS19939.complete Sequence
2150 bp assembled on 2011-01-28
GenBank Submission: KX803657
> BS19939.complete
GAAGTTATCAGTCGACATGCGCAGCGGGCGGAGCTATGGCCAGCGGCAGA
GCGACACGTTGGAGAGCAGCTTCGAGCTGGAGGATTCCGAGGCGGAACAG
GTCAATTCACCGGTGGCAATCAAGGGAGAACCATCGGCGCACGGAGATAC
AGATCGGGATGGGGATGCCGATCGAGAGCGGCAGGAGTCGGGTGAACAGA
CGGACAGTCTGAGCACGCGTAGCAGCAGCTCCACGCCGACAACGGCGGAC
GTGGCCGATGTGGAGACGATCAGCTCCCTGCCGCTCTCACCACCCGCCTT
TGGCGGTCGGGGCAATCAGCTGGTCAAGCGTCACTCTCCGCTGAAGGACA
AGCAGGCAGAGCAGGCGGACAGCAGCTCCAGCTCCAGCTGCAGTCAGCAG
CCCGATGCGGACGATGTGCCCACGGTAAGTGGGTGCGATCTGCGGCAGAG
CCCGCCCTCATCTTCGTCCTCCTCCTCCTCAACTTCCACATCCCCGCAGA
CTTCGCGGTATGCAGCTGCAGCAGCACATCCCAGCGCGGCATTCGCGGAG
ACGGCGATCACCGCGTCGTCGGGATCGGGCCGAGTGTGCGGCGGTAGCGG
AGGAGCCGCCCACAGGCGCACCCACTCGGCCGCCTCCTACATCTCGATGA
GATCGCAGGGCGGCAACTCGGAGGCGACTCCGGAGCGACCAAAGCGTAAC
CGCTTCTTCGAGTGGATTCGCGTTGTGTGCAACATCTGCTGCTGCAAGAG
TTCCGGAATCGGGGAGCCGAGTGTTCATCATGCGCTGGTTGTGATATTTC
TAGAGTTCTTCGCCTGGGGCCTGCTGACGATGCCCATAATATCGACTCTC
AACCAGACGTTCCCGGATCACACATTCCTAATGAACGGCCTGGTCATGGG
CATCAAGGGGATCCTGTCGTTCCTGTCGGCGCCTCTGATCGGCGCCCTTT
CGGACATCTGGGGCCGAAAGTTTTTCCTATTAGTCACAGTATTCTTCACC
TGCCTGCCCATACCGCTGATGTCCATCAATACGTGGTGGTTCTTTGCCAT
GATCTCAATAAGCGGCGCCTTCGCAGTCACCTTCTCGGTGGTGTTTGCCT
ACGTGGCGGACGTCACCACGCCGGAGGAGCGATCAAAGGCCTATGGCCTG
GCCTCGGCCACATTTGCCGCCAGTCTGGTCATCTCGCCGGCTCTGGGCAA
TGCCCTGATGGAGATGTACGGAGACACGCTGGTCGTGGCCCTCTCCACGG
CCATTGCGCTGCTCGATGTATTCTTCATACTGGTGGCCGTGCCGGAGAGT
CTATCAGAGAAGATGCGGCCAGCCTCCTGGGGTGCGCCTATCAGCTGGGA
GCAGGCGGATCCATTTCTGGCCCTGCGCAAAGTGGGCACCGATAAGACCG
TGCTGATGCTGTGCCTCACCGTGCTGTTATCCTATCTGCCCGAGGCAGGG
GAGTATTCCTGCATGTTTGTCTATCTGAAACTGAAGATGGGCTTTAACTA
TGTGGAGGTCTCGGTCTTTATAGCCATAGTAGGCATCCTCAGCATCACGG
TGCAAGTCACACTCGGCTCCTTCATGCAAGTGTTTGGAGCCAAGCGCACG
ATTATAATGGGCCTAGCCCTGGAAATCGTGCAGCTGCTGTGGTACGGCTT
TGGCAGTCAAAAGTGGATGATGTGGTCGGCTGGCGTTGTGGCTGCCCTGG
GCTCCATCACGTATCCCGCCATCAGTGCTTTTGTATCCCTTTATGCGGCT
CCCGAGAGTCAGGGCGCTGTTCAGGGCATGATCACGGGCATGAGGGGTCT
GTGCAATGGCCTGGGTCCTGCGGTCTTCGGCGTCGTCTTCTACCTGTTTA
ACGTCGATCTGAACGACGACCACGACTCGCATGCGAAGAGCAGCGGCAGC
AGGGCGACGAACGTGGAGAAGATCTCACAGCATGTGCCAGGTCCGCCCTT
CGTGTTTGGTGCCTTGTGCGTCTTCTGTGCCATAATAGTGTCCGCGTTCA
TTCCGGAGGGGCAGACCTCCACATTGGAAAAGAAACGTGCCTCGCTAGAC
GTACAGTACGAGATTGAGCCGGGTCACAAGGCGCCCAGCTCACTGGCGCC
GCTCATTCGCTCCGACTCGCTGGCGCAGCTGTAGAAGCTTTCTAGACCAT
BS19939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RG | 2118 | CG11537-PG | 1..2118 | 17..2134 | 10590 | 100 | Plus |
| CG11537-RE | 2118 | CG11537-PE | 1..2118 | 17..2134 | 10590 | 100 | Plus |
| CG11537-RD | 2118 | CG11537-PD | 1..2118 | 17..2134 | 10590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-RG | 3348 | CG11537-RG | 736..2854 | 16..2134 | 10595 | 100 | Plus |
| CG11537-RE | 3214 | CG11537-RE | 436..2554 | 16..2134 | 10595 | 100 | Plus |
| CG11537-RD | 3911 | CG11537-RD | 501..2619 | 16..2134 | 10595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3132309..3133041 | 748..16 | 3665 | 100 | Minus |
| 3L | 28110227 | 3L | 3130511..3131037 | 1370..844 | 2635 | 100 | Minus |
| 3L | 28110227 | 3L | 3129585..3129860 | 2038..1763 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 3130239..3130448 | 1578..1369 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 3129925..3130024 | 1764..1665 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 3131109..3131206 | 844..747 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 3129326..3129423 | 2134..2037 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 3130091..3130178 | 1666..1579 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 967..1002 | 452..487 | 117 | 80.6 | Plus |
BS19939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:49 Download gff for
BS19939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RE | 437..2554 | 17..2134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:10 Download gff for
BS19939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RD | 502..2619 | 17..2134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:27 Download gff for
BS19939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11537-RD | 502..2619 | 17..2134 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:27 Download gff for
BS19939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3129926..3130023 | 1666..1763 | 100 | <- | Minus |
| 3L | 3130092..3130178 | 1579..1665 | 100 | <- | Minus |
| 3L | 3130239..3130447 | 1370..1578 | 100 | <- | Minus |
| 3L | 3129326..3129423 | 2037..2134 | 100 | <- | Minus |
| 3L | 3129587..3129859 | 1764..2036 | 100 | <- | Minus |
| 3L | 3130512..3131036 | 845..1369 | 100 | <- | Minus |
| 3L | 3131109..3131204 | 749..844 | 100 | <- | Minus |
| 3L | 3132309..3133040 | 17..748 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:10 Download gff for
BS19939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3131109..3131204 | 749..844 | 100 | <- | Minus |
| arm_3L | 3129326..3129423 | 2037..2134 | 100 | <- | Minus |
| arm_3L | 3129587..3129859 | 1764..2036 | 100 | <- | Minus |
| arm_3L | 3129926..3130023 | 1666..1763 | 100 | <- | Minus |
| arm_3L | 3130092..3130178 | 1579..1665 | 100 | <- | Minus |
| arm_3L | 3130239..3130447 | 1370..1578 | 100 | <- | Minus |
| arm_3L | 3130512..3131036 | 845..1369 | 100 | <- | Minus |
| arm_3L | 3132309..3133040 | 17..748 | 100 | | Minus |
BS19939.pep Sequence
Translation from 16 to 2133
> BS19939.pep
MRSGRSYGQRQSDTLESSFELEDSEAEQVNSPVAIKGEPSAHGDTDRDGD
ADRERQESGEQTDSLSTRSSSSTPTTADVADVETISSLPLSPPAFGGRGN
QLVKRHSPLKDKQAEQADSSSSSSCSQQPDADDVPTVSGCDLRQSPPSSS
SSSSSTSTSPQTSRYAAAAAHPSAAFAETAITASSGSGRVCGGSGGAAHR
RTHSAASYISMRSQGGNSEATPERPKRNRFFEWIRVVCNICCCKSSGIGE
PSVHHALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMNGLVMGIKGIL
SFLSAPLIGALSDIWGRKFFLLVTVFFTCLPIPLMSINTWWFFAMISISG
AFAVTFSVVFAYVADVTTPEERSKAYGLASATFAASLVISPALGNALMEM
YGDTLVVALSTAIALLDVFFILVAVPESLSEKMRPASWGAPISWEQADPF
LALRKVGTDKTVLMLCLTVLLSYLPEAGEYSCMFVYLKLKMGFNYVEVSV
FIAIVGILSITVQVTLGSFMQVFGAKRTIIMGLALEIVQLLWYGFGSQKW
MMWSAGVVAALGSITYPAISAFVSLYAAPESQGAVQGMITGMRGLCNGLG
PAVFGVVFYLFNVDLNDDHDSHAKSSGSRATNVEKISQHVPGPPFVFGAL
CVFCAIIVSAFIPEGQTSTLEKKRASLDVQYEIEPGHKAPSSLAPLIRSD
SLAQL*
BS19939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11537-PG | 705 | CG11537-PG | 1..705 | 1..705 | 3598 | 100 | Plus |
| CG11537-PE | 705 | CG11537-PE | 1..705 | 1..705 | 3598 | 100 | Plus |
| CG11537-PD | 705 | CG11537-PD | 1..705 | 1..705 | 3598 | 100 | Plus |
| CG11537-PA | 680 | CG11537-PA | 1..680 | 1..705 | 3439 | 96.5 | Plus |
| CG11537-PB | 680 | CG11537-PB | 1..680 | 1..705 | 3439 | 96.5 | Plus |
