BS19942.complete Sequence
1595 bp assembled on 2012-04-25
GenBank Submission: KX806552
> BS19942.complete
GAAGTTATCAGTCGACATGCTGCGCGTTTTGAAGACCGGTGCCCTGCTGC
GTTCCCAGGCCAAGAACTTCGCAGCAGCTGTTGCGAACTACTCCTCCCTC
CCGCAGCCACAGACAACGCCCGATATCCTCTACACCGGGGTATTTATCAA
CAACGAGTGGCACAAGAGCAAGTCGGGCAAAATATTTGAAACCATCAACC
CGACCACAGCGGAAGTCATTGCCGAAATTCAGTGTGCTGATAAGGAAGAT
ATCGATATTGCCGTCCAGGCTGCACGCAATGCATTCAAGTTGGGATCTCC
ATGGCGTCGCATGGATGCCTCGGAGCGGGGTCGCCTGCTCTACCGCCTGG
CTGATCTCATGGAACGCGATCAGGTCTATCTTGCCAGTCTGGAGACCCTT
GACAACGGCAAGCCCTACAGCATGTCCTACAACGTGGATCTCCCGACTGC
CATCAAGAACCTGCGCTACTTTGCTGGATGGGCGGACAAGAACCATGGCA
AGACTATTCCCATGGACGGAGATTTCTTCACTTACACCCGCCATGAACCC
GTGGGCGTGTGCGGCCAGATCATTCCCTGGAACTTCCCCATCCTGATGAT
GGCCTGGAAACTGGGTCCCGCTTTGGCTACCGGCAACACCATTGTACTAA
AGCCCGCTGAGCAGACCAGTTTGACTGCTCTGTACATTGCCCAGTTGGTG
AAGGAGGCTGGCTTCCCCGAAGGTGTGGTCAATGTGGTTCCCGGATTTGG
AACTGCTGGCGCTGCCTTGGCGAACCACTGCGATGTGGATAAGGTGGCCT
TCACCGGTTCCACCGATGTGGGCAAACTTATCCAACTAGCATCGGGAAAT
ACTAACCTAAAGAGAGTGACACTGGAGTTGGGAGGCAAGTCGCCAAACAT
TATTCTGTCTGACACCGATATGGACTACGCCGTCGAGACGGCTCACTTTG
GTCTGTTCTTTAACATGGGCCAGTGCTGCTGTGCAGGATCTCGTACTTTC
GTGGAGGACAAGATCTACGATGAGTTTGTCGAGCGCAGCGCGGAGCGGGC
TAAGAAGCGCACCGTGGGCAATCCCTTTGATCTGAACACTGAGCAAGGTC
CTCAGGTGAACGAGGAGCAGATGGAAAAGATCCTTGGAATGATCAAAACA
GGCAAGAAACAGGGCGCTAAGTTGGTTGCCGGTGGCAGTCGCCCAGAGGG
CCTACCCGGCTACTTCGTCCAGCCCACGGTGTTCGCCGATGTCCAGGATG
ATATGACCATTGCAAGGGAGGAGATCTTTGGACCGGTTCAGCAGCTGATC
CGCTTCAAGAAGCTGGATGAGGTCATCGAGCGGGCTAACAACTCCGAGTA
CGGATTGGCCGCCGCCGTTTTCACCAAGGATCTGGACAAGGCCAACTACA
TTGTGGGTGGCCTGCGTGCCGGAACTGTGTGGGTAAACACCTACAATGTC
CTCGCTGCCCAGGCTCCGTTCGGTGGCTACAAGATGTCCGGCCATGGACG
CGAGAACGGAGAGTATGCTCTGTCCAACTACACGGAGGTCAAGAGCGTCA
TCGTCAAGGTTGCCCAGAAGAACTCCTAAAAGCTTTCTAGACCAT
BS19942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-RB | 1563 | CG3752-PB | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| Aldh-RA | 1563 | CG3752-PA | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| CG31075-RB | 1527 | CG31075-PB | 496..710 | 536..750 | 295 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-RB | 1900 | CG3752-RB | 210..1772 | 17..1579 | 7815 | 100 | Plus |
| Aldh-RA | 2070 | CG3752-RA | 380..1942 | 17..1579 | 7815 | 100 | Plus |
| CG31075-RB | 1764 | CG31075-RB | 631..845 | 536..750 | 295 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9390246..9391439 | 386..1579 | 5970 | 100 | Plus |
| 2L | 23513712 | 2L | 9389828..9389979 | 139..290 | 760 | 100 | Plus |
| 2L | 23513712 | 2L | 9387768..9387893 | 17..142 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 9390040..9390136 | 289..385 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 26986606..26986820 | 750..536 | 295 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:59:29 has no hits.
BS19942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:02 Download gff for
BS19942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-RA | 380..1940 | 17..1577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:41 Download gff for
BS19942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-RA | 380..1940 | 17..1577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:03 Download gff for
BS19942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-RA | 380..1940 | 17..1577 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:03 Download gff for
BS19942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9387768..9387890 | 17..139 | 100 | -> | Plus |
| 2L | 9389829..9389977 | 140..288 | 100 | -> | Plus |
| 2L | 9390040..9390136 | 289..385 | 100 | -> | Plus |
| 2L | 9390246..9391437 | 386..1577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:41 Download gff for
BS19942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9387768..9387890 | 17..139 | 100 | -> | Plus |
| arm_2L | 9389829..9389977 | 140..288 | 100 | -> | Plus |
| arm_2L | 9390040..9390136 | 289..385 | 100 | -> | Plus |
| arm_2L | 9390246..9391437 | 386..1577 | 100 | | Plus |
BS19942.pep Sequence
Translation from 16 to 1578
> BS19942.pep
MLRVLKTGALLRSQAKNFAAAVANYSSLPQPQTTPDILYTGVFINNEWHK
SKSGKIFETINPTTAEVIAEIQCADKEDIDIAVQAARNAFKLGSPWRRMD
ASERGRLLYRLADLMERDQVYLASLETLDNGKPYSMSYNVDLPTAIKNLR
YFAGWADKNHGKTIPMDGDFFTYTRHEPVGVCGQIIPWNFPILMMAWKLG
PALATGNTIVLKPAEQTSLTALYIAQLVKEAGFPEGVVNVVPGFGTAGAA
LANHCDVDKVAFTGSTDVGKLIQLASGNTNLKRVTLELGGKSPNIILSDT
DMDYAVETAHFGLFFNMGQCCCAGSRTFVEDKIYDEFVERSAERAKKRTV
GNPFDLNTEQGPQVNEEQMEKILGMIKTGKKQGAKLVAGGSRPEGLPGYF
VQPTVFADVQDDMTIAREEIFGPVQQLIRFKKLDEVIERANNSEYGLAAA
VFTKDLDKANYIVGGLRAGTVWVNTYNVLAAQAPFGGYKMSGHGRENGEY
ALSNYTEVKSVIVKVAQKNS*
BS19942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-PB | 520 | CG3752-PB | 1..520 | 1..520 | 2701 | 100 | Plus |
| Aldh-PA | 520 | CG3752-PA | 1..520 | 1..520 | 2701 | 100 | Plus |
| CG31075-PA | 485 | CG31075-PA | 10..484 | 39..515 | 1413 | 56.5 | Plus |
| CG31075-PB | 508 | CG31075-PB | 33..507 | 39..515 | 1407 | 56.3 | Plus |
| CG8665-PA | 913 | CG8665-PA | 433..912 | 40..514 | 1133 | 46.5 | Plus |
