Clone BS19944 Report

Search the DGRC for BS19944

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:199
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptSod3-RA
Protein status:BS19944.pep: full length peptide match
Sequenced Size:599

Clone Sequence Records

BS19944.complete Sequence

599 bp assembled on 2011-01-07

GenBank Submission: KX806479

> BS19944.complete
GAAGTTATCAGTCGACATGATTTCCTTGCAGTTCAAAATGATGCAATATC
TTGTTGTTAGCCTGGCACTCTGTGCCACAATTTGCTCTGCTGCGCAGACG
CGCAATATGCCCATTCAAGCCATTGCCTATCTGATTGGACCCGTGCAATC
GGATAATACCCAGGTCAAGGGCAACGTGACCTTTACGCAGAACGACTGTG
GCCAGAATGTCCATGTGCGCGTCCAGCTGGAGGGATTGAAGGAGGGCAAG
CACGGCTTCCACATTCACGAGAAGGGAGATCTGACCAATGGATGCATCAG
CATGGGTGCTCACTATAACCCCGATAAGGTTGATCACGGTGGCCCCGATC
ACGAGGTGCGTCATGTTGGCGATCTGGGCAACCTGGAGGCCAACTCCACG
GGCATTATCGACGTTACATACACGGATCAGGTGATCACCTTAACTGGCAA
GCTGGGGATCATTGGCAGGGGAGTTGTTGTCCACGAATTGGAGGATGATC
TCGGTCTGGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGC
CGCATTGCCTGTGGTGTTATTGGCATCAAGTAAAAGCTTTCTAGACCAT

BS19944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 546 CG9027-PA 1..546 38..583 2730 100 Plus
Sod3-RB 546 CG9027-PB 1..546 38..583 2730 100 Plus
Sod3-RE 732 CG9027-PE 1..542 38..579 2710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-RA 896 CG9027-RA 99..653 30..584 2775 100 Plus
Sod3-RB 1040 CG9027-RB 245..797 32..584 2765 100 Plus
Sod3-RE 1228 CG9027-RE 99..648 30..579 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11381949..11382183 334..100 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 557..327 1155 100 Minus
2R 25286936 2R 11382249..11382332 100..17 420 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:21:34 has no hits.

BS19944.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:26 Download gff for BS19944.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1757..2321 17..581 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:57 Download gff for BS19944.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RA 90..650 22..581 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:31 Download gff for BS19944.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RA 90..650 22..581 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:31 Download gff for BS19944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11381663..11381891 329..557 100 <- Minus
2R 11381955..11382182 101..328 100 <- Minus
2R 11382249..11382332 17..100 100   Minus
2R 11381571..11381594 558..581 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:57 Download gff for BS19944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7269076..7269099 558..581 100 <- Minus
arm_2R 7269168..7269396 329..557 100 <- Minus
arm_2R 7269460..7269687 101..328 100 <- Minus
arm_2R 7269754..7269837 17..100 100   Minus

BS19944.pep Sequence

Translation from 16 to 582

> BS19944.pep
MISLQFKMMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQV
KGNVTFTQNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHY
NPDKVDHGGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIG
RGVVVHELEDDLGLGNHTDSKKTGNAGGRIACGVIGIK*

BS19944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-PA 181 CG9027-PA 1..181 8..188 960 100 Plus
Sod3-PB 181 CG9027-PB 1..181 8..188 960 100 Plus
Sod3-PD 217 CG9027-PD 1..180 8..187 955 100 Plus
Sod3-PE 243 CG9027-PE 1..180 8..187 955 100 Plus
Sod-PA 153 CG11793-PA 10..150 47..187 374 55.3 Plus