BS19944.complete Sequence
599 bp assembled on 2011-01-07
GenBank Submission: KX806479
> BS19944.complete
GAAGTTATCAGTCGACATGATTTCCTTGCAGTTCAAAATGATGCAATATC
TTGTTGTTAGCCTGGCACTCTGTGCCACAATTTGCTCTGCTGCGCAGACG
CGCAATATGCCCATTCAAGCCATTGCCTATCTGATTGGACCCGTGCAATC
GGATAATACCCAGGTCAAGGGCAACGTGACCTTTACGCAGAACGACTGTG
GCCAGAATGTCCATGTGCGCGTCCAGCTGGAGGGATTGAAGGAGGGCAAG
CACGGCTTCCACATTCACGAGAAGGGAGATCTGACCAATGGATGCATCAG
CATGGGTGCTCACTATAACCCCGATAAGGTTGATCACGGTGGCCCCGATC
ACGAGGTGCGTCATGTTGGCGATCTGGGCAACCTGGAGGCCAACTCCACG
GGCATTATCGACGTTACATACACGGATCAGGTGATCACCTTAACTGGCAA
GCTGGGGATCATTGGCAGGGGAGTTGTTGTCCACGAATTGGAGGATGATC
TCGGTCTGGGCAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGC
CGCATTGCCTGTGGTGTTATTGGCATCAAGTAAAAGCTTTCTAGACCAT
BS19944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 546 | CG9027-PA | 1..546 | 38..583 | 2730 | 100 | Plus |
Sod3-RB | 546 | CG9027-PB | 1..546 | 38..583 | 2730 | 100 | Plus |
Sod3-RE | 732 | CG9027-PE | 1..542 | 38..579 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-RA | 896 | CG9027-RA | 99..653 | 30..584 | 2775 | 100 | Plus |
Sod3-RB | 1040 | CG9027-RB | 245..797 | 32..584 | 2765 | 100 | Plus |
Sod3-RE | 1228 | CG9027-RE | 99..648 | 30..579 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11381949..11382183 | 334..100 | 1160 | 99.6 | Minus |
2R | 25286936 | 2R | 11381663..11381893 | 557..327 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 11382249..11382332 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:21:34 has no hits.
BS19944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:26 Download gff for
BS19944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9027-RC | 1757..2321 | 17..581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:57 Download gff for
BS19944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RA | 90..650 | 22..581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:31 Download gff for
BS19944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sod3-RA | 90..650 | 22..581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:31 Download gff for
BS19944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11381663..11381891 | 329..557 | 100 | <- | Minus |
2R | 11381955..11382182 | 101..328 | 100 | <- | Minus |
2R | 11382249..11382332 | 17..100 | 100 | | Minus |
2R | 11381571..11381594 | 558..581 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:57 Download gff for
BS19944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7269076..7269099 | 558..581 | 100 | <- | Minus |
arm_2R | 7269168..7269396 | 329..557 | 100 | <- | Minus |
arm_2R | 7269460..7269687 | 101..328 | 100 | <- | Minus |
arm_2R | 7269754..7269837 | 17..100 | 100 | | Minus |
BS19944.pep Sequence
Translation from 16 to 582
> BS19944.pep
MISLQFKMMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQV
KGNVTFTQNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHY
NPDKVDHGGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIG
RGVVVHELEDDLGLGNHTDSKKTGNAGGRIACGVIGIK*
BS19944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sod3-PA | 181 | CG9027-PA | 1..181 | 8..188 | 960 | 100 | Plus |
Sod3-PB | 181 | CG9027-PB | 1..181 | 8..188 | 960 | 100 | Plus |
Sod3-PD | 217 | CG9027-PD | 1..180 | 8..187 | 955 | 100 | Plus |
Sod3-PE | 243 | CG9027-PE | 1..180 | 8..187 | 955 | 100 | Plus |
Sod-PA | 153 | CG11793-PA | 10..150 | 47..187 | 374 | 55.3 | Plus |