BS19946.complete Sequence
1385 bp assembled on 2011-01-07
GenBank Submission: KX803825
> BS19946.complete
GAAGTTATCAGTCGACATGTCTGTCCACTCACCCAATCCTGGCTTAATCC
TCCAGAGCAAGCGTTTCAATGGACTGCGGAACATCCTGGAACGCGAAGGT
CCCTTCTGCAAGGACGGTTTCGCGGCCTCGTCGGAAAACCTGGAGTTCTT
GCAGACCAAGTGCCAGGTTCTGATCATCGGAGCCGGTGGCCTGGGCTGCG
AACTGCTGAAGGATCTGGCTCTGATGGGCTTCGGCAACCTGCACGTCATC
GACATGGACACCATCGAGCTGTCCAACCTGAATCGCCAGTTTCTGTTCCG
TCGCACAGACATTGGCGCCTCCAAGGCGGAGTGTGCGGCTCGCTTCATCA
ACGCAAGAGTGCCTACTTGCCGGGTGACGCCGCATTTCAAGAAAATCCAG
GACTTCGATGAGTCCTTCTATCAGCAGTTCCACCTGGTTGTCTGTGGCCT
AGACTCCATTGTCGCCCGGCGTTGGATCAATGGCATGCTGCTATCAATGC
TGCGATATGAGGAGGACGGCACCATAGATACCAGCTCCATAGTGCCCATG
ATTGATGGCGGCACCGAGGGCTTCAAGGGGAACGCACGCGTCATCCTGCC
CGGTTTCACGGCCTGCATTGAGTGCACGCTGGACCTGTTCCCGCCGCAGG
TCAACTATCCCCTATGCACCATAGCAAATACTCCCAGGCTTCCGGAGCAT
TGCATTGAGTACGTAAAGATCATACAGTGGGAGAAACAGAATCCGTTTGG
AGTGCCCCTCGATGGGGACGATCCCCAGCACATTGGTTGGATCTACGAAC
GGGCACTGGAGCGGTCCAATGAGTTTAACATCACCGGAGTGACCTATCGC
TTGGTCCAGGGCGTTGTCAAGCACATCATTCCAGCTGTGGCCAGTACCAA
TGCAGCCATTGCCGCCGCCTGTGCTTTGGAGGTCTTTAAGTTGGCCACCA
GCTGCTATGACAGCATGGCAAACTACCTGAACTTCAACGACCTGGACGGA
ATCTATACCTACACCTACGAGGCCGAGAAGTCGGAAAACTGCTTGGCGTG
CAGCAATACACCGCAGCCGTTGCCGATTGAGGATCCCAACACCACCACGC
TGGAGGATGTGATAAAGCTATTGTGTGATTCCCCGCGTTTCCAGCTGAAA
AGCCCAGCCTTGACCACTGTGATGAAGGACGGCAAGCGGCGGACTTTGTA
CATGTCCGGGGTAAAGAGCATTGAAGAGGCCACCCGAAAGAACCTTACTC
AGAGCCTGGGCGAACTGGGTCTACACGATGGACAGCAGCTCACAGTCACC
GATGCCACCTCGCCGTCCGCCATGACTCTGCAGCTGAAGTATCAGTCCAA
TGAGGTGGAGATGGTCTAAAAGCTTTCTAGACCAT
BS19946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba3-RA | 1353 | CG13343-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba3-RA | 1481 | CG13343-RA | 47..1400 | 17..1370 | 6770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13858998..13860351 | 17..1370 | 6770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:26:36 has no hits.
BS19946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:44 Download gff for
BS19946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13343-RA | 42..1392 | 17..1367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:00 Download gff for
BS19946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba3-RA | 47..1397 | 17..1367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:26 Download gff for
BS19946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba3-RA | 47..1397 | 17..1367 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:26 Download gff for
BS19946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13858998..13860348 | 17..1367 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:00 Download gff for
BS19946.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9746503..9747853 | 17..1367 | 100 | | Plus |
BS19946.pep Sequence
Translation from 16 to 1368
> BS19946.pep
MSVHSPNPGLILQSKRFNGLRNILEREGPFCKDGFAASSENLEFLQTKCQ
VLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDIG
ASKAECAARFINARVPTCRVTPHFKKIQDFDESFYQQFHLVVCGLDSIVA
RRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTAC
IECTLDLFPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPFGVPLDG
DDPQHIGWIYERALERSNEFNITGVTYRLVQGVVKHIIPAVASTNAAIAA
ACALEVFKLATSCYDSMANYLNFNDLDGIYTYTYEAEKSENCLACSNTPQ
PLPIEDPNTTTLEDVIKLLCDSPRFQLKSPALTTVMKDGKRRTLYMSGVK
SIEEATRKNLTQSLGELGLHDGQQLTVTDATSPSAMTLQLKYQSNEVEMV
*
BS19946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba3-PA | 450 | CG13343-PA | 1..450 | 1..450 | 2363 | 100 | Plus |
| Uba2-PA | 700 | CG7528-PA | 13..207 | 42..252 | 369 | 39.4 | Plus |
| Uba1-PC | 1008 | CG1782-PC | 426..601 | 53..234 | 255 | 33.5 | Plus |
| Uba1-PA | 1191 | CG1782-PA | 609..784 | 53..234 | 255 | 33.5 | Plus |
