Clone BS19948 Report

Search the DGRC for BS19948

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:199
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG5399-RA
Protein status:BS19948.pep: full length peptide match
Sequenced Size:689

Clone Sequence Records

BS19948.complete Sequence

689 bp assembled on 2011-01-07

GenBank Submission: KX801322

> BS19948.complete
GAAGTTATCAGTCGACATGTGCAATAGTGCGATCATCTGCCTGGCAATCG
TGGCCGCCGTGGCCTCCATCTCTCAGGTTTCGGCCCAAGCCCAAACAACG
CCACAATCCTGCGCCCAAGCCACCGGCATTAGTTTTAACCAGACCGCTTT
TAGTGGTCAGTGGGTCGAGTTGGCCCGCAATCCCGCCTCAAATGTCTCCT
GCATTTCCCTTAACGTGGCTTTCTGGAACAACAACAATTACATGCTGGTC
AATGTCAGCCATTCAAGCAATGTCGCCTCCACTTTGGTGGACGTCTATGA
AACTGCGAATATCACGCTGGTGGAGAACAACCTCAGCGGATACAATGTCA
CCCTGGTGAATGGCCAGAAGCAGGAGTACGTCTTCGTGAAGTTGCTTAGC
TTTGTGAACTCCACCTATCTGGTTGGATGCACCTACACCAATGCTACCAA
CACATCAACCAGTGCTGGTTTTATTCTGGGTAGGTCCACCTATACTCCGG
AAGGCGTAAGGATTGCCAACAATGATGCCTCCGTGTCCTTCAGCAATTTC
CAGAACAACACCTACGGCAATGTCACTCAGTTGGATTGCCGTGCCAGTTC
CGCCGGACAGACTGTGCCTCTGACCCTGATATCTGGCTTCCTTGCCTTTG
CCCTTTTGCTGATCAAGGCCTAAAAGCTTTCTAGACCAT

BS19948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5399-RB 657 CG5399-PB 1..657 17..673 3285 100 Plus
CG5399-RA 657 CG5399-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5399-RB 1546 CG5399-RB 93..752 16..675 3300 100 Plus
CG5399-RA 969 CG5399-RA 93..752 16..675 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15695749..15696185 149..585 2185 100 Plus
3R 32079331 3R 15695333..15695472 16..155 670 98.6 Plus
3R 32079331 3R 15696259..15696348 586..675 450 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:26:54 has no hits.

BS19948.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:45 Download gff for BS19948.complete
Subject Subject Range Query Range Percent Splice Strand
CG5399-RA 65..719 17..671 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:04 Download gff for BS19948.complete
Subject Subject Range Query Range Percent Splice Strand
CG5399-RA 94..748 17..671 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:32 Download gff for BS19948.complete
Subject Subject Range Query Range Percent Splice Strand
CG5399-RA 94..748 17..671 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:32 Download gff for BS19948.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15695334..15695465 17..148 100 -> Plus
3R 15695749..15696185 149..585 100 -> Plus
3R 15696259..15696344 586..671 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:04 Download gff for BS19948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11521056..11521187 17..148 100 -> Plus
arm_3R 11521471..11521907 149..585 100 -> Plus
arm_3R 11521981..11522066 586..671 100   Plus

BS19948.pep Sequence

Translation from 16 to 672

> BS19948.pep
MCNSAIICLAIVAAVASISQVSAQAQTTPQSCAQATGISFNQTAFSGQWV
ELARNPASNVSCISLNVAFWNNNNYMLVNVSHSSNVASTLVDVYETANIT
LVENNLSGYNVTLVNGQKQEYVFVKLLSFVNSTYLVGCTYTNATNTSTSA
GFILGRSTYTPEGVRIANNDASVSFSNFQNNTYGNVTQLDCRASSAGQTV
PLTLISGFLAFALLLIKA*

BS19948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5399-PB 218 CG5399-PB 1..218 1..218 1100 100 Plus
CG5399-PA 218 CG5399-PA 1..218 1..218 1100 100 Plus
CG31446-PA 232 CG31446-PA 8..223 5..215 161 30.9 Plus
CG31446-PB 237 CG31446-PB 8..228 5..215 157 30.2 Plus