BS19948.complete Sequence
689 bp assembled on 2011-01-07
GenBank Submission: KX801322
> BS19948.complete
GAAGTTATCAGTCGACATGTGCAATAGTGCGATCATCTGCCTGGCAATCG
TGGCCGCCGTGGCCTCCATCTCTCAGGTTTCGGCCCAAGCCCAAACAACG
CCACAATCCTGCGCCCAAGCCACCGGCATTAGTTTTAACCAGACCGCTTT
TAGTGGTCAGTGGGTCGAGTTGGCCCGCAATCCCGCCTCAAATGTCTCCT
GCATTTCCCTTAACGTGGCTTTCTGGAACAACAACAATTACATGCTGGTC
AATGTCAGCCATTCAAGCAATGTCGCCTCCACTTTGGTGGACGTCTATGA
AACTGCGAATATCACGCTGGTGGAGAACAACCTCAGCGGATACAATGTCA
CCCTGGTGAATGGCCAGAAGCAGGAGTACGTCTTCGTGAAGTTGCTTAGC
TTTGTGAACTCCACCTATCTGGTTGGATGCACCTACACCAATGCTACCAA
CACATCAACCAGTGCTGGTTTTATTCTGGGTAGGTCCACCTATACTCCGG
AAGGCGTAAGGATTGCCAACAATGATGCCTCCGTGTCCTTCAGCAATTTC
CAGAACAACACCTACGGCAATGTCACTCAGTTGGATTGCCGTGCCAGTTC
CGCCGGACAGACTGTGCCTCTGACCCTGATATCTGGCTTCCTTGCCTTTG
CCCTTTTGCTGATCAAGGCCTAAAAGCTTTCTAGACCAT
BS19948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5399-RB | 657 | CG5399-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
CG5399-RA | 657 | CG5399-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5399-RB | 1546 | CG5399-RB | 93..752 | 16..675 | 3300 | 100 | Plus |
CG5399-RA | 969 | CG5399-RA | 93..752 | 16..675 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15695749..15696185 | 149..585 | 2185 | 100 | Plus |
3R | 32079331 | 3R | 15695333..15695472 | 16..155 | 670 | 98.6 | Plus |
3R | 32079331 | 3R | 15696259..15696348 | 586..675 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:26:54 has no hits.
BS19948.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:45 Download gff for
BS19948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5399-RA | 65..719 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:38:04 Download gff for
BS19948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5399-RA | 94..748 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:32 Download gff for
BS19948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5399-RA | 94..748 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:32 Download gff for
BS19948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15695334..15695465 | 17..148 | 100 | -> | Plus |
3R | 15695749..15696185 | 149..585 | 100 | -> | Plus |
3R | 15696259..15696344 | 586..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:38:04 Download gff for
BS19948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11521056..11521187 | 17..148 | 100 | -> | Plus |
arm_3R | 11521471..11521907 | 149..585 | 100 | -> | Plus |
arm_3R | 11521981..11522066 | 586..671 | 100 | | Plus |
BS19948.pep Sequence
Translation from 16 to 672
> BS19948.pep
MCNSAIICLAIVAAVASISQVSAQAQTTPQSCAQATGISFNQTAFSGQWV
ELARNPASNVSCISLNVAFWNNNNYMLVNVSHSSNVASTLVDVYETANIT
LVENNLSGYNVTLVNGQKQEYVFVKLLSFVNSTYLVGCTYTNATNTSTSA
GFILGRSTYTPEGVRIANNDASVSFSNFQNNTYGNVTQLDCRASSAGQTV
PLTLISGFLAFALLLIKA*
BS19948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5399-PB | 218 | CG5399-PB | 1..218 | 1..218 | 1100 | 100 | Plus |
CG5399-PA | 218 | CG5399-PA | 1..218 | 1..218 | 1100 | 100 | Plus |
CG31446-PA | 232 | CG31446-PA | 8..223 | 5..215 | 161 | 30.9 | Plus |
CG31446-PB | 237 | CG31446-PB | 8..228 | 5..215 | 157 | 30.2 | Plus |