BS19952.complete Sequence
677 bp assembled on 2011-01-07
GenBank Submission: KX802835
> BS19952.complete
GAAGTTATCAGTTGACATGCTGAAACCATTCGCCGTGATTATCGGAATTT
TTTATTTAGGTTCCACCATTAAGGGCGTCGTGGCCATTCTGAACTGTATC
CTAGCACGTCAGCTATGCTTCGAGGATCCCTCATGTTCGGCCATTTTGGA
AATAATACCTCGCGTCTGCGGACCCATTCCAGTGTCCTGCAGCACGGTGA
CGGTGACCAAGTGTCAGGCTGCCCTGCGCACCCTGCAGGCCTTCCAGTTC
TTTCGGCCCACCTGCCTGTGCAAGGAGCCCGGAATGGATCCGGACTGCAA
TCACTTTCGGGACTTTCTCTTCGATCATCCATGCGGATTTGTGCTGAAGA
AAGCCGAAAAGGATCCGTACCCCATTGATGCCCTACCAACTTGCAACCAT
GCACTTTCCGTCTGCCAACAGGAACGCAAATGTCTAAAGCTCTTCGAGGA
CTTCAAAACGCATTGCAAAGTGCGCGACAACAAATGCAAAATGGAAAACA
GGGACGCCTGCCACGACTCCTGGACCAACCTGCGTCTGTCGCCCATGTTC
GGATGCATCTGCCCGAACAACCATATGAAAAAGCGCTGTGATCGTATCTT
TAATATTGTTAATCACAATCCTTGCGTGGGTAAGTTTCGACTGGCGATGC
TGAACTGTTGAAAGCTTTCTAGACCAT
BS19952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RK | 645 | CG43224-PK | 1..645 | 17..661 | 3225 | 100 | Plus |
| Gfrl-RF | 2595 | CG43224-PF | 1..615 | 17..631 | 3075 | 100 | Plus |
| Gfrl-RJ | 3639 | CG43224-PJ | 1..613 | 17..629 | 3065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-RK | 3139 | CG43224-RK | 1610..2256 | 15..661 | 3235 | 100 | Plus |
| Gfrl-RF | 6524 | CG43224-RF | 1610..2226 | 15..631 | 3085 | 100 | Plus |
| Gfrl-RJ | 6630 | CG43224-RJ | 672..1286 | 15..629 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20403224..20403397 | 353..180 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 20401147..20401309 | 661..499 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 20403012..20403162 | 502..352 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 20411082..20411206 | 182..58 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 20465005..20465051 | 61..15 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:22:35 has no hits.
BS19952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:29 Download gff for
BS19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42801-RC | 1575..2218 | 17..660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:07 Download gff for
BS19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RK | 1612..2255 | 17..660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:53 Download gff for
BS19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gfrl-RK | 1612..2255 | 17..660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:53 Download gff for
BS19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20403013..20403160 | 354..501 | 100 | <- | Minus |
| 3R | 20403224..20403394 | 183..353 | 100 | <- | Minus |
| 3R | 20411082..20411204 | 60..182 | 100 | <- | Minus |
| 3R | 20465007..20465049 | 17..59 | 100 | | Minus |
| 3R | 20401148..20401306 | 502..660 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:07 Download gff for
BS19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16236804..16236926 | 60..182 | 100 | <- | Minus |
| arm_3R | 16290729..16290771 | 17..59 | 100 | | Minus |
| arm_3R | 16226870..16227028 | 502..660 | 100 | <- | Minus |
| arm_3R | 16228735..16228882 | 354..501 | 100 | <- | Minus |
| arm_3R | 16228946..16229116 | 183..353 | 100 | <- | Minus |
BS19952.pep Sequence
Translation from 16 to 660
> BS19952.pep
MLKPFAVIIGIFYLGSTIKGVVAILNCILARQLCFEDPSCSAILEIIPRV
CGPIPVSCSTVTVTKCQAALRTLQAFQFFRPTCLCKEPGMDPDCNHFRDF
LFDHPCGFVLKKAEKDPYPIDALPTCNHALSVCQQERKCLKLFEDFKTHC
KVRDNKCKMENRDACHDSWTNLRLSPMFGCICPNNHMKKRCDRIFNIVNH
NPCVGKFRLAMLNC*
BS19952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gfrl-PK | 214 | CG43224-PK | 1..214 | 1..214 | 1197 | 100 | Plus |
| Gfrl-PF | 864 | CG43224-PF | 1..205 | 1..205 | 1149 | 100 | Plus |
| Gfrl-PH | 1101 | CG43224-PH | 1..206 | 1..206 | 1144 | 99 | Plus |
| Gfrl-PJ | 1212 | CG43224-PJ | 1..206 | 1..206 | 1144 | 99 | Plus |
| Gfrl-PG | 1212 | CG43224-PG | 1..206 | 1..206 | 1144 | 99 | Plus |
