BS19956.complete Sequence
2618 bp assembled on 2011-01-28
GenBank Submission: KX804785
> BS19956.complete
GAAGTTATCAGTCGACATGGGACCAATATGCCGCATCCTGGGCTGCTCCT
TTCTGCTGCTCATCGCCGGATTAGTGCCGCACCATGCCTCCAGAGTCGTC
GGATTGGAATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAACGGAAA
GTGCATTCCGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCGCCGATG
GAAGCGATGAATCGACGTCCCAGTGCCGGGGCCTGTGTTCCTCCTTGATG
TTCATGTGTAAAAATGGTGAGCAGTGTATACACCGGGAATTCATGTGCGA
TGGCGACCAGGACTGTCGCGACGGATCCGACGAATTGGAATGTGGCAATA
GGACATGTCGCTCCGACGAGTTCACCTGCGGCAATGGACGTTGCATTCAG
AATCGCTTCAAGTGCGACGATGACGACGATTGTGGTGACGGATCGGATGA
GAAGAACTGCGGGGAAAAGGCGAAATGCGGATCCAATTTCTTCGCTTGCA
AAAGTGGACCGTGCATTCCCAATCAATGGGTTTGCGATGGAGATTCAGAC
TGCAGAAATGGCGAAGATGAAATGCAAAACTGCACCGTCAGTCTATTGAA
CTTCTGCCAAGCGGGTGAGTTCCAGTGCTCGGATAGAATCACCTGCCTGC
ACAAATCGTGGGTTTGCGATGGCGAGGCCGATTGTCCCGATGGCGAGGAC
GAATCGCAGTCCAACTGCCTAAAAGTGTCCTGTCGTCCGGATCAGTTCCA
ATGCAACGATCAAAGCTGCATCGCTGGCCATCTGACCTGCAACGGGAAGA
GGGACTGTGCGGATGGCAGTGATGAAATTATGTGCGACATTAGTGCGACG
CCAAGGACTTGCAATGCAACCACTGAATTCGATTGCGGCGGTGGTCTGTG
CATCCCGAATGCCAAGGTCTGCAACCGCAGGAAGGATTGCCCGAATGGCG
AGGATGAGCCGGCCGGAAAGTGTGGCATCAACGAGTGCTCCTCGAAGAAT
GGCGGCTGTATGCACCAGTGTGTGAATCTGGAGGTGGGTTACCGCTGCGA
GTGCCACGATGGCTATAAACTGGGCGCCGATCAACACACATGTGTGGACA
TCGATGAATGTGAGACTCCTGGCATTTGCTCCCAGGTGTGCGTCAACGAG
ATCGGAGCCTTTAAGTGCGAGTGCGAGGCGGGCTACATGAGACTCCTGAA
GAATCACACCAGGTGTAAGGCCAGCGAAGGACATGCCTCGCTACTTCTGG
CCAGGCGCCATGACATCCGGAAGATAGCACTGGATCGACCGGAAATGACG
TCAATAGTGAATAGTACAAAGGCAGCCACGGCTCTGGACTTCGTGTTCCG
CACGGGAATGATCTTCTGGAGCGATGTTGCAACCCAGAGTATTTACAAAG
CGCCCATTGATGAGGGTAACGATAGAACGGTGGTGCTGACAAAGTCCTCG
GTGACCTCGGATGGCCTGGCTGTCGATTGGATCTATAACCATGTCTACTT
TACGGACACCCACAAGTGCACCATCGAACTGACCAACTTCGAGGGCAGCA
TGGGCAAGGTCCTGGTAAAGGACTCCCTGGACATTCCTCGTTCCATTGCT
TTGGATCCCATCGAGGGCTGGATGTACTGGTCCGACTGGGGCGCCTCTCC
GCGCATCGAAAGGGCGGGTATGGATGGCACCCACCGCACTGCCATCATCA
CCTACGATGTTAAGTGGCCAAATGGCATCACATTGGACCTGGTTCAAAAA
CGCCTTTACTGGGTGGATGGCAAGTTGAACACCATCTCGTCGTCAAACTA
CGATGGCTCGCAAAGACATCAGGTGCTCTACTCCGGCGAATACCTGCGAC
ATCCCTTCTCGATCACCACCTTCGAGGACTACGTCTACTGGACCGACTGG
GATAAGCAAGCCGTCTTCAAGGCCAACAAGTTCAATGGAATGGATGTGGA
GCCTGTTACGGCGACGCATATGTTGGAACATCCCATGGTGGTGCACGTGT
ACCATCCTTATCGCCAGCCAGATGGCGTGAATCACTGCCAGTCGGTGAAT
GGCCACTGTTCTCATCTTTGCCTGCCAGCTCCCAGGATTAACGAGCGGAG
TCCTCGCATATCCTGCGCCTGTCCGACAGGCCTGAAATTAATGCCCGACG
GGCTAATGTGCGTCGAAGATCTGGGTATCCCAACTGTGCGTCCCACTGCA
CCGATGCACCGGACAATCGAACAGTCGTCCAACTCAACCACAAAACTACC
TCAAGATGGGTACAGTGAAACGCCGGTTGAAACAAAAACTGGAAACAACC
GCACAGACACATCTAACCAGGTCCACAAATCTGATGCCGAATCAGAAAAT
GATTACGTCGAAATAGCCTTGCATGTGATTGCCAGTTTAGCGGGCACAGC
TTTAGTAGCAAGCGTCATCTATGTCGTATACCGACGCTGCACGCGCGCCG
TGAACTCGATGAACTTCGAGAATCCCGTCTACCACAAGACCACAGAGGAC
CACTTCAGTCTGGAGAAGAATGGGACGCCACACATTTACGCCGCAGCCAA
TGACGAGGAGGCCGTCAACCCCCTCTTCAAATCTGGCACCGAATGTGTTT
AGAAGCTTTCTAGACCAT
BS19956.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RF | 2586 | CG31092-PF | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| LpR2-RG | 3192 | CG31092-PG | 697..3192 | 107..2602 | 12480 | 100 | Plus |
| LpR2-RH | 2589 | CG31092-PH | 332..2589 | 345..2602 | 11290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RF | 4145 | CG31092-RF | 300..2887 | 15..2602 | 12940 | 100 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 930..3425 | 107..2602 | 12480 | 100 | Plus |
| LpR2-RH | 3397 | CG31092-RH | 619..2876 | 345..2602 | 11290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25706816..25708214 | 1972..574 | 6995 | 100 | Minus |
| 3R | 32079331 | 3R | 25744980..25746092 | 1972..860 | 3015 | 84.7 | Minus |
| 3R | 32079331 | 3R | 25709291..25709517 | 574..348 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25706287..25706486 | 2171..1972 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 25701308..25701455 | 2561..2414 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 25701523..25701662 | 2415..2276 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 25744684..25744876 | 2171..1979 | 680 | 90.2 | Minus |
| 3R | 32079331 | 3R | 25713841..25713962 | 228..107 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25713537..25713656 | 347..228 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 25705931..25706035 | 2276..2172 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 25718398..25718490 | 107..15 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 25747127..25747229 | 454..352 | 260 | 83.5 | Minus |
| 3R | 32079331 | 3R | 25699985..25700028 | 2602..2559 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:25:18 has no hits.
BS19956.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:51 Download gff for
BS19956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RF | 213..2798 | 17..2602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:32 Download gff for
BS19956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RF | 302..2887 | 17..2602 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:42 Download gff for
BS19956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RF | 302..2887 | 17..2602 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:42 Download gff for
BS19956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25701309..25701455 | 2414..2560 | 100 | <- | Minus |
| 3R | 25701525..25701661 | 2277..2413 | 100 | <- | Minus |
| 3R | 25705931..25706035 | 2172..2276 | 100 | <- | Minus |
| 3R | 25706287..25706485 | 1973..2171 | 100 | <- | Minus |
| 3R | 25699985..25700026 | 2561..2602 | 100 | <- | Minus |
| 3R | 25706816..25708213 | 575..1972 | 100 | <- | Minus |
| 3R | 25709291..25709517 | 348..574 | 100 | <- | Minus |
| 3R | 25713537..25713656 | 228..347 | 100 | <- | Minus |
| 3R | 25713842..25713961 | 108..227 | 100 | <- | Minus |
| 3R | 25718398..25718488 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:32 Download gff for
BS19956.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21544120..21544210 | 17..107 | 100 | | Minus |
| arm_3R | 21525707..21525748 | 2561..2602 | 100 | <- | Minus |
| arm_3R | 21527031..21527177 | 2414..2560 | 100 | <- | Minus |
| arm_3R | 21527247..21527383 | 2277..2413 | 100 | <- | Minus |
| arm_3R | 21531653..21531757 | 2172..2276 | 100 | <- | Minus |
| arm_3R | 21532009..21532207 | 1973..2171 | 100 | <- | Minus |
| arm_3R | 21532538..21533935 | 575..1972 | 100 | <- | Minus |
| arm_3R | 21535013..21535239 | 348..574 | 100 | <- | Minus |
| arm_3R | 21539259..21539378 | 228..347 | 100 | <- | Minus |
| arm_3R | 21539564..21539683 | 108..227 | 100 | <- | Minus |
BS19956.pep Sequence
Translation from 16 to 2601
> BS19956.pep
MGPICRILGCSFLLLIAGLVPHHASRVVGLESTCSQEQFRCGNGKCIPRR
WVCDRENDCADGSDESTSQCRGLCSSLMFMCKNGEQCIHREFMCDGDQDC
RDGSDELECGNRTCRSDEFTCGNGRCIQNRFKCDDDDDCGDGSDEKNCGE
KAKCGSNFFACKSGPCIPNQWVCDGDSDCRNGEDEMQNCTVSLLNFCQAG
EFQCSDRITCLHKSWVCDGEADCPDGEDESQSNCLKVSCRPDQFQCNDQS
CIAGHLTCNGKRDCADGSDEIMCDISATPRTCNATTEFDCGGGLCIPNAK
VCNRRKDCPNGEDEPAGKCGINECSSKNGGCMHQCVNLEVGYRCECHDGY
KLGADQHTCVDIDECETPGICSQVCVNEIGAFKCECEAGYMRLLKNHTRC
KASEGHASLLLARRHDIRKIALDRPEMTSIVNSTKAATALDFVFRTGMIF
WSDVATQSIYKAPIDEGNDRTVVLTKSSVTSDGLAVDWIYNHVYFTDTHK
CTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIERA
GMDGTHRTAIITYDVKWPNGITLDLVQKRLYWVDGKLNTISSSNYDGSQR
HQVLYSGEYLRHPFSITTFEDYVYWTDWDKQAVFKANKFNGMDVEPVTAT
HMLEHPMVVHVYHPYRQPDGVNHCQSVNGHCSHLCLPAPRINERSPRISC
ACPTGLKLMPDGLMCVEDLGIPTVRPTAPMHRTIEQSSNSTTKLPQDGYS
ETPVETKTGNNRTDTSNQVHKSDAESENDYVEIALHVIASLAGTALVASV
IYVVYRRCTRAVNSMNFENPVYHKTTEDHFSLEKNGTPHIYAAANDEEAV
NPLFKSGTECV*
BS19956.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-PF | 861 | CG31092-PF | 1..861 | 1..861 | 4797 | 100 | Plus |
| LpR2-PH | 862 | CG31092-PH | 1..862 | 1..861 | 4659 | 97.7 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 233..1063 | 31..861 | 4640 | 100 | Plus |
| LpR2-PB | 826 | CG31092-PB | 1..826 | 1..861 | 4567 | 95.9 | Plus |
| LpR2-PE | 1064 | CG31092-PE | 233..1064 | 31..861 | 4502 | 97.6 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 351..551 | 29..226 | 353 | 36.5 | Plus |
| LpR2-PG | 1063 | CG31092-PG | 186..369 | 190..332 | 247 | 32.8 | Plus |
