BS19957.complete Sequence
956 bp assembled on 2011-01-28
GenBank Submission: KX800986
> BS19957.complete
GAAGTTATCAGTCGACATGCCTACTAGGATATGTGTGCTGTTTGGGCTTC
TGTGCCTCGCAAGCTTATGCTGCGGTAGTAACAAGCCAGGAGAGGTGCTC
CTGGTTATCGCCTGTCCCCCGCATCCTCAGCAGGCCAGAAGTGATTGTTT
AGCCTTATCGCACAACGTGCTGGAGCAGCAACGGGCACTGGAACTGGCGG
GGATCTTCCCCGAGGACTTTGTCCTGAAGGTCCATGTGATGCATGAGCTC
TTTAACTCCTGGACCATGCTGGACGCACTGCCTCATCTAAGAGCCCAGGC
ACGTGTGCTGGGTGCGCGCACGGAATGGATTATATGGTGTCAACACAACA
CGCGTGTGTCTTCGTTGCGCGGCCTGCTCGAGCAACTGCGTCGCCAGAAC
CCAAGGGAGCTAGCTTTCTATGGGCACGCCCTTTACGATGCGGAGGCAAC
CATCATCCACCACTTCTCGAACTACAAGGATCCCCAGCGGTTTCCATATC
CCATGCTCAGTGCCGGAGTCGTTTTCACTGGTGCTCTGTTGCGAAGGTTG
GCGGATCTGGTTGCTCCTAGTGGCCAAAACATCACCGTTCACAGCGATTT
CTCCATTGATGCCTCTCACGAGCTGGCTCGCTTTATTTTCGACAATGTAT
CGCCCGACCCGCATATTAGCACCCCGATTTCCGGAGGAATCCTGCTGAAA
AGTGCCAGCTACATATGTTCCACACCCACGTCCGTGCCAAACAGGAAACT
GCCTTGTCTGCTGCATGCGCAGCCGGAGGAGCCACTGACTTTGGGGCAGC
GGAGAAATGGCTGTGTAAGTTTATTTATGCCTGGCATGCCTTGTTGCAGC
AAAATCATATATCATGCTAAGGGGCTTTTGATTAAGATGAGGTATTTGCA
AAAATGTCAAAATTTCGTTATTTTGCATGAATGTTTTTAAAAGCTTTCTA
GACCAT
BS19957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9109-RC | 1641 | CG9109-PC | 1..799 | 17..815 | 3995 | 100 | Plus |
| CG9109-RA | 1608 | CG9109-PA | 1..799 | 17..815 | 3995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9109-RC | 1833 | CG9109-RC | 101..899 | 17..815 | 3995 | 100 | Plus |
| CG9109-RA | 1809 | CG9109-RA | 101..899 | 17..815 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6033196..6033591 | 940..545 | 1980 | 100 | Minus |
| 2L | 23513712 | 2L | 6033931..6034323 | 409..17 | 1965 | 100 | Minus |
| 2L | 23513712 | 2L | 6033737..6033877 | 548..408 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:35 has no hits.
BS19957.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:06:02 Download gff for
BS19957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9109-RB | 101..1022 | 17..938 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:58 Download gff for
BS19957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9109-RA | 101..899 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:00 Download gff for
BS19957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9109-RA | 101..899 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:00 Download gff for
BS19957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6033198..6033589 | 547..938 | 100 | <- | Minus |
| 2L | 6033739..6033875 | 410..546 | 100 | <- | Minus |
| 2L | 6033931..6034323 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:58 Download gff for
BS19957.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6033198..6033589 | 547..938 | 100 | <- | Minus |
| arm_2L | 6033739..6033875 | 410..546 | 100 | <- | Minus |
| arm_2L | 6033931..6034323 | 17..409 | 100 | | Minus |
BS19957.pep Sequence
Translation from 16 to 939
> BS19957.pep
MPTRICVLFGLLCLASLCCGSNKPGEVLLVIACPPHPQQARSDCLALSHN
VLEQQRALELAGIFPEDFVLKVHVMHELFNSWTMLDALPHLRAQARVLGA
RTEWIIWCQHNTRVSSLRGLLEQLRRQNPRELAFYGHALYDAEATIIHHF
SNYKDPQRFPYPMLSAGVVFTGALLRRLADLVAPSGQNITVHSDFSIDAS
HELARFIFDNVSPDPHISTPISGGILLKSASYICSTPTSVPNRKLPCLLH
AQPEEPLTLGQRRNGCVSLFMPGMPCCSKIIYHAKGLLIKMRYLQKCQNF
VILHECF*
BS19957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9109-PA | 535 | CG9109-PA | 1..266 | 1..266 | 1414 | 100 | Plus |
| CG9109-PC | 546 | CG9109-PC | 1..266 | 1..266 | 1414 | 100 | Plus |
