BS19958.complete Sequence
1415 bp assembled on 2011-01-07
GenBank Submission: KX805124
> BS19958.complete
GAAGTTATCAGTCGACATGCTGTCCAGCGAGATAGCCACTCTCGAGTGTG
TGCATCATCCGAATATACTGAGGCTTTTCGAGGTGGTCGAAACTCTGGGC
CGCGTTTACCTGGTCACTGAGTGGATTCGCGGTGGCGAGCTATACAACCA
CATCACCCAAGGCGGTCCGCTGCGGGAGATTCATGCGGCCCCGTTGCTGA
AACAACTCCTCCTGGCAGTCAAACATATGCACAGTCTGGGCTACGTGCAT
CGGGACATAAAGGCGGAAAATGTCCTGCTCCTCTCCGAGGATCGCCTCAA
GCTGGCCGACTTCGGTTTCAGTACCCAACTCATCAATGGTGCCAATCAAA
AGCTCGACACGTTCTGCGGATCCCCTCCGTATGCGGCGCCCGAGCTCTTC
TCCGATGACCACTACATAGGGGCGCCCGTGGATGTTTGGGCCCTGGGCAT
CCTGCTCTACTTCATGGTGGTCGGAAACATGCCCTTCCGGGCACCAACGA
TTCCCGGCCTGAAAGCAGCCATCCTGAAGGGTGACTATCTGCTGCCCGGC
CAGCTCAGCTTGCCCTGCATAAGACTTATACAACGCATCTTGATTCATAT
ACCCGCCCAGCGGCCAACCATCGACGACATGCTGAACAGCCAGTTCGTGA
CCTGTCCCAAGCTCAGTGCCGATCTGATGCAGTGGGAGATCAACCAGCAC
ACCAAGCCGGTCAAGAGGTCCATCTTCTGGGTGCGCAGCAAGTCGCATCG
GCTGCGGAAGTCCGCCTCACTACGGGATCGATACGCGGAGGTGGTCAAGA
AGCCGGCCATTAGCATGAACACCAGGCAGCAGGACGAGATGTTTGTGCAG
AACTTCCTGCAACCGATCGAGATGGGACACGAACTGTTGGTCCCGGTGTC
AAGTCAGCTGAAGGAGCCACAGTCCACCGAGCAGGCGAAGCGTCCAACCA
GAAGGTACATGTTCTGCGGCAGCCTGAAGAAGAAGGTCACGCCCATGGAA
ACGGAACCGGAGAAGCAGCTGGCCAACGGTGGACAGTCAATCGGTTCGGC
CAAGATCAATCCGTGGAATGTGGAGGTGGCCGAGGATTGCCCCCTGTTCA
AGAACTACGACGCGGAGACGGGCAGCTGCGTCATGCTGCCCACGAACACC
GAGGATCTGAGCCAGCTAGGTGCCCTGGAGTTCGAGGCACGCCAGATCCT
GGCCGAGCTGGGCCTCACCTCCGAGATGCTGATCAACGCCAGGCAGAGCG
GGCCGCGCTCCGACATCATTGGCGCCTACAGGATCGTGGTCAATCGGTTG
CAGAAGCAGTCCTGGCTGGCACGAAAGCACGTGGAGATGGCACTGCACAG
CGAGCCCAAGGTGGAGAAGCGGATTGAGAGGTCGTGCTGCATACTCTAAA
AGCTTTCTAGACCAT
BS19958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4629-RF | 1713 | CG4629-PF | 331..1713 | 17..1399 | 6915 | 100 | Plus |
| CG4629-RE | 1713 | CG4629-PE | 331..1713 | 17..1399 | 6915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4629-RF | 2910 | CG4629-RF | 757..2139 | 17..1399 | 6915 | 100 | Plus |
| CG4629-RE | 3115 | CG4629-RE | 805..2187 | 17..1399 | 6915 | 100 | Plus |
| Atg4a-RB | 4075 | CG4428-RB | 2714..3531 | 1399..582 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1084019..1084836 | 1399..582 | 4090 | 100 | Minus |
| 2L | 23513712 | 2L | 1084894..1085137 | 581..338 | 1220 | 100 | Minus |
| 2L | 23513712 | 2L | 1085524..1085682 | 229..71 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 1085199..1085310 | 340..229 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 1085743..1085799 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:21:44 has no hits.
BS19958.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:26 Download gff for
BS19958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4629-RC | 807..2187 | 17..1397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:00 Download gff for
BS19958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4629-RE | 805..2185 | 17..1397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:35 Download gff for
BS19958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4629-RE | 805..2185 | 17..1397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:35 Download gff for
BS19958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1085201..1085309 | 230..338 | 100 | <- | Minus |
| 2L | 1085524..1085680 | 73..229 | 100 | <- | Minus |
| 2L | 1085744..1085799 | 17..72 | 100 | | Minus |
| 2L | 1084894..1085136 | 339..581 | 100 | <- | Minus |
| 2L | 1084021..1084836 | 582..1397 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:00 Download gff for
BS19958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1085524..1085680 | 73..229 | 100 | <- | Minus |
| arm_2L | 1084021..1084836 | 582..1397 | 100 | <- | Minus |
| arm_2L | 1085744..1085799 | 17..72 | 100 | | Minus |
| arm_2L | 1084894..1085136 | 339..581 | 100 | <- | Minus |
| arm_2L | 1085201..1085309 | 230..338 | 100 | <- | Minus |
BS19958.pep Sequence
Translation from 16 to 1398
> BS19958.pep
MLSSEIATLECVHHPNILRLFEVVETLGRVYLVTEWIRGGELYNHITQGG
PLREIHAAPLLKQLLLAVKHMHSLGYVHRDIKAENVLLLSEDRLKLADFG
FSTQLINGANQKLDTFCGSPPYAAPELFSDDHYIGAPVDVWALGILLYFM
VVGNMPFRAPTIPGLKAAILKGDYLLPGQLSLPCIRLIQRILIHIPAQRP
TIDDMLNSQFVTCPKLSADLMQWEINQHTKPVKRSIFWVRSKSHRLRKSA
SLRDRYAEVVKKPAISMNTRQQDEMFVQNFLQPIEMGHELLVPVSSQLKE
PQSTEQAKRPTRRYMFCGSLKKKVTPMETEPEKQLANGGQSIGSAKINPW
NVEVAEDCPLFKNYDAETGSCVMLPTNTEDLSQLGALEFEARQILAELGL
TSEMLINARQSGPRSDIIGAYRIVVNRLQKQSWLARKHVEMALHSEPKVE
KRIERSCCIL*
BS19958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4629-PF | 570 | CG4629-PF | 111..570 | 1..460 | 2389 | 100 | Plus |
| CG4629-PE | 570 | CG4629-PE | 111..570 | 1..460 | 2389 | 100 | Plus |
| par-1-PS | 827 | CG8201-PS | 297..504 | 2..211 | 470 | 41.4 | Plus |
| KP78b-PB | 604 | CG17216-PB | 107..314 | 2..211 | 466 | 42.9 | Plus |
| KP78b-PA | 604 | CG17216-PA | 107..314 | 2..211 | 466 | 42.9 | Plus |
