BS19960.complete Sequence
671 bp assembled on 2011-01-07
GenBank Submission: KX805308
> BS19960.complete
GAAGTTATCAGTCGACATGCCAGCGGATCCATCTGAAGAAGTTGCCCCTC
AGGTCCCGAAGACCGAGCTAGAAGAGCTGCAAATTAATGCGCAAGGAGTA
GCCGATGAGTCCCTGGAAAGTACGCGACGTATGCTTGCTCTGTGTGAGGA
GAGCAAGGAGGCAGGGATTCGAACACTTGTAGCCCTTGATGATCAAGGAG
AACAACTGGATCGTATTGAAGAAGGAATGGATCAAATTAATGCAGACATG
AGAGAAGCAGAAAAAAATTTAAGTGGAATGGAAAAATGTTGCGGCATTTG
TGTTCTTCCGTGCAATAAAAGTCAATCATTCAAAGAAGATGATGGGACCT
GGAAAGGAAATGATGACGGAAAAGTTGTAAATAATCAGCCACAGAGAGTG
ATGGATGATAGAAATGGCATGATGGCGCAAGCGGGTTATATTGGCAGGAT
AACGAACGACGCTAGAGAAGATGAAATGGAAGAAAATATGGGCCAGGTAA
ACACTATGATAGGCAATCTCCGAAATATGGCATTGGATATGGGCTCTGAG
CTGGAAAATCAAAATCGTCAAATTGATAGAATAAACCGGAAGGGTGAATC
TAATGAAGCGCGGATAGCAGTTGCTAATCAAAGGGCACATCAACTATTAA
AGTAAAAGCTTTCTAGACCAT
BS19960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snap25-RA | 639 | CG40452-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Snap25-RC | 639 | CG40452-PC | 1..639 | 17..655 | 2940 | 97.3 | Plus |
Snap24-RA | 639 | CG9474-PA | 70..281 | 101..312 | 280 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snap25-RA | 2233 | CG40452-RA | 133..773 | 17..657 | 3205 | 100 | Plus |
Snap25-RC | 2233 | CG40452-RC | 133..773 | 17..657 | 2950 | 97.3 | Plus |
Snap24-RA | 1846 | CG9474-RA | 371..582 | 101..312 | 280 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24258490..24258637 | 446..593 | 740 | 100 | Plus |
3L | 28110227 | 3L | 24253793..24253922 | 319..448 | 650 | 100 | Plus |
3L | 28110227 | 3L | 24210019..24210138 | 199..318 | 600 | 100 | Plus |
3L | 28110227 | 3L | 24079466..24079558 | 17..109 | 465 | 100 | Plus |
3L | 28110227 | 3L | 24297679..24297745 | 591..657 | 335 | 100 | Plus |
3R | 32079331 | 3R | 9762569..9762780 | 312..101 | 280 | 75.5 | Minus |
3L | 28110227 | 3L | 24161129..24161179 | 150..200 | 255 | 100 | Plus |
3L | 28110227 | 3L | 24131194..24131237 | 108..151 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:22:10 has no hits.
BS19960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:28 Download gff for
BS19960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap25-RA | 84..720 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:04 Download gff for
BS19960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap25-RA | 133..769 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:43 Download gff for
BS19960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snap25-RA | 133..769 | 17..653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:43 Download gff for
BS19960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24210019..24210138 | 199..318 | 100 | -> | Plus |
3L | 24253793..24253921 | 319..447 | 100 | -> | Plus |
3L | 24079466..24079558 | 17..109 | 100 | == | Plus |
3L | 24258492..24258636 | 448..592 | 100 | -> | Plus |
3L | 24297681..24297741 | 593..653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:04 Download gff for
BS19960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24251592..24251736 | 448..592 | 100 | -> | Plus |
arm_3L | 24290781..24290841 | 593..653 | 100 | | Plus |
arm_3L | 24072566..24072658 | 17..109 | 100 | == | Plus |
arm_3L | 24203119..24203238 | 199..318 | 100 | -> | Plus |
arm_3L | 24246893..24247021 | 319..447 | 100 | -> | Plus |
BS19960.pep Sequence
Translation from 16 to 654
> BS19960.pep
MPADPSEEVAPQVPKTELEELQINAQGVADESLESTRRMLALCEESKEAG
IRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCN
KSQSFKEDDGTWKGNDDGKVVNNQPQRVMDDRNGMMAQAGYIGRITNDAR
EDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNEARI
AVANQRAHQLLK*
BS19960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snap25-PA | 212 | CG40452-PA | 1..212 | 1..212 | 1093 | 100 | Plus |
Snap25-PC | 212 | CG40452-PC | 1..212 | 1..212 | 1065 | 96.7 | Plus |
Snap24-PA | 212 | CG9474-PA | 9..211 | 14..212 | 750 | 71.9 | Plus |