BS19961.complete Sequence
1211 bp assembled on 2011-01-07
GenBank Submission: KX803031
> BS19961.complete
GAAGTTATCAGTCGACATGTTTGACAAGAATTTGGACGGCAACAATCTGT
CGGTCTCCATCGGTGGGGATTTGGATTCGACGAGTTCCGGCGGCACATCC
TCGGATCACTCGGCTGTCCATCAGGACAATCTCAGCTCTCCGATGGCCTA
CGGATCCCTCTTCCTCCCAAATGCTGGTTATCGTGGCAACCTGTCATGCA
AAACGGTCCTGCAGCTGGACAAGTTCGCACCCTACGAGGGTGTGGAGAAG
GATCACCTGCTGGAGCGGCGGTTTCAGGACATCACCAATGACTACGACAA
GTCGCCGCCGCCCACCGCCTCGACCACGCCCACGCACTATCCCAGCCTGA
ACAGCATAATATTTGAGAATGGGAGCAGTGGCAACCTGGGCGATCTCAAC
GGGAACACGAAGACGGATCTATGCGCCGGTCTGCAGAGAAGTGGCGGCGG
ATTGGGGGGCAATGCCGGCAGTGGTGGCCACCTCATATCCAATCTCACAG
CCGCCCACAACATGTCCGCCGTGAGCAGCTTTCCTATCGACGCCAAGATG
CTGCAGTTCTCCACGGATCAGATCCAGTGCATGTGCGAGGCACTGCAGCA
GAAGGGCGACATCGAGAAGCTGACCACATTCCTCTGCAGCCTGCCGCCCA
GCGAGTTCTTCAAGACCAACGAGAGTGTCCTGCGGGCCCGCGCCATGGTG
GCCTACAATCTGGGCCAGTTCCACGAGCTGTACAACCTGCTGGAGACGCA
CTGCTTTTCGATCAAGTACCACGTGGACCTGCAGAACCTCTGGTTCAAGG
CCCACTACAAGGAGGCCGAGAAGGTGCGTGGCCGACCACTGGGCGCCGTG
GACAAGTACCGTCTGCGCAAGAAGTATCCCCTGCCCAAGACGATCTGGGA
TGGCGAGGAGACGGTCTACTGCTTCAAGGAGAAGTCGCGCAACGCTCTCA
AGGACTGCTACCTGACCAACCGCTATCCCACCCCCGACGAGAAGAAGACG
CTGGCCAAGAAGACCGGGCTCACGCTCACCCAGGTCTCCAACTGGTTCAA
GAATCGTCGACAGCGGGATCGCACGCCCCAGCAAAGACCGGACATCATGT
CGGTGCTGCCCGTGGGCCAACTGGATGGCAATGGATTCCCGCGCATGTTC
AATGCTCCAAGCTATTATCCCGAAACGATTTTCAATGGGCAATAAAAGCT
TTCTAGACCAT
BS19961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Six4-RB | 1179 | CG3871-PB | 1..1179 | 17..1195 | 5820 | 99.6 | Plus |
| Six4-RA | 1179 | CG3871-PA | 1..1179 | 17..1195 | 5820 | 99.6 | Plus |
| Optix-RC | 1479 | CG18455-PC | 362..495 | 798..931 | 340 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Six4-RB | 1426 | CG3871-RB | 68..1247 | 17..1196 | 5825 | 99.6 | Plus |
| Six4-RA | 1849 | CG3871-RA | 491..1670 | 17..1196 | 5825 | 99.6 | Plus |
| Optix-RC | 2668 | CG18455-RC | 1037..1170 | 798..931 | 340 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20790135..20790655 | 1090..570 | 2590 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20790720..20791115 | 571..176 | 1935 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20792126..20792287 | 178..17 | 795 | 99.4 | Minus |
| 3L | 28110227 | 3L | 20789065..20789171 | 1196..1090 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 8034290..8034379 | 842..931 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:22:57 has no hits.
BS19961.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:30 Download gff for
BS19961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Six4-RB | 74..1244 | 23..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:12 Download gff for
BS19961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Six4-RA | 497..1667 | 23..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:01 Download gff for
BS19961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Six4-RA | 497..1667 | 23..1193 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:01 Download gff for
BS19961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20789068..20789171 | 1090..1193 | 100 | <- | Minus |
| 3L | 20790136..20790653 | 572..1089 | 99 | <- | Minus |
| 3L | 20790720..20791114 | 177..571 | 99 | <- | Minus |
| 3L | 20792128..20792281 | 23..176 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:12 Download gff for
BS19961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20782168..20782271 | 1090..1193 | 100 | <- | Minus |
| arm_3L | 20783236..20783753 | 572..1089 | 99 | <- | Minus |
| arm_3L | 20783820..20784214 | 177..571 | 99 | <- | Minus |
| arm_3L | 20785228..20785381 | 23..176 | 99 | | Minus |
BS19961.pep Sequence
Translation from 16 to 1194
> BS19961.pep
MFDKNLDGNNLSVSIGGDLDSTSSGGTSSDHSAVHQDNLSSPMAYGSLFL
PNAGYRGNLSCKTVLQLDKFAPYEGVEKDHLLERRFQDITNDYDKSPPPT
ASTTPTHYPSLNSIIFENGSSGNLGDLNGNTKTDLCAGLQRSGGGLGGNA
GSGGHLISNLTAAHNMSAVSSFPIDAKMLQFSTDQIQCMCEALQQKGDIE
KLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK
YHVDLQNLWFKAHYKEAEKVRGRPLGAVDKYRLRKKYPLPKTIWDGEETV
YCFKEKSRNALKDCYLTNRYPTPDEKKTLAKKTGLTLTQVSNWFKNRRQR
DRTPQQRPDIMSVLPVGQLDGNGFPRMFNAPSYYPETIFNGQ*
BS19961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Six4-PB | 392 | CG3871-PB | 1..392 | 1..392 | 2095 | 100 | Plus |
| Six4-PA | 392 | CG3871-PA | 1..392 | 1..392 | 2095 | 100 | Plus |
| so-PA | 416 | CG11121-PA | 22..279 | 100..357 | 647 | 50.6 | Plus |
| Optix-PA | 487 | CG18455-PA | 15..212 | 159..352 | 516 | 51.5 | Plus |
| Optix-PC | 492 | CG18455-PC | 15..212 | 159..352 | 516 | 51.5 | Plus |
