BS19965.complete Sequence
1517 bp assembled on 2011-01-07
GenBank Submission: KX800207
> BS19965.complete
GAAGTTATCAGTCGACATGTCCAAGGTGGGAGTTGTGCAGTTGCAGAGGC
GTCTGGATGGCTTACTGGCCTTCCTCAATCCGCACTGGGATTTTGTCAAT
TGCCACATGGTGAACTACTTGACGGACCAGCACTGGGACGGCTTTTTATC
CGAAACGCTGAAAAGTGAGATCGCCGGCAAGGAAGATGTGGCTCTGGCCA
TAGAAGACCTATTTTGGAAAACTGATGAATCAGAAAGGTTTCCGGCATGG
CGAGAATTCCTAGGCAAGAGCAAACAAGAACGCCTGTCGCTTCATCCGAA
ACTCCTGACCAGCGTGGAGGAACTTATCGAGGGTCAGGGGAACTCCACGC
AGCTAAGCATTCGGGAGTTTATGAGCGCCAAAAAGTGCCATGAGGTGGAT
CTAACAGCCGTTCTCGTGGACCAGCTTGTGAAGAACTCCGGTCAAGATTG
CTTCATTGTAGACGCGGGCGATGGCAAAGGGTATTTATCCTCGCGCTTGG
CGCTCCAGTATGGTCACCGCGTGCTCGGCATCGATGCGAACGCGGCAAAC
ACCGAGAACGCATTGAATAGGAATCGCAAATTGCAGCGCGCTTGGAATGG
CCTTACGGAACGAGCGGAGCTGCAAGTCCAGGGAATCACGCCCAAGAGAC
GTAGTAAAAAGTCGCCAGCCAGGGAGAGCACCAAGAGTGCGCCTGCCTTG
GAAAACTACAAGACAACGGCAAAGTTTATAACCACCGAACTTAACTTTGG
TGCCCTGCTGGCGGAGAATTTCACTCAGTTTAGACCGGAAGACAGTCCAA
ACATTTGCCTTACTGGATTGCATACCTGTGGCAACCTGGCCGCCACCTGT
CTTCAGGTTTTCCACGCCCAAACGGACTGCCGGTTGCTTTGTAATGTTGG
CTGCTGCTATCATTTGCTGCGGGAGCGCTATTCGCAGCAGGAGTTCTTTG
GCAATAAGTCCCTGATGGAGCTGCAAACAGACTATGGATTCCCATTGAGT
CAGTACCTGCGGGAGCGACAAGTGCGAATGGGTCGCAATGCGCGGATGCT
GGCGGCCCAGTCAATTGAACGCACCTTGGACACCAAGGAGCTGCCTAATG
TAACGCTCTACTATCGAGCTCTCTTGGAGATTCTGGTTTGCCGCCATGCG
CCGGAGCTGAAAAACGAACTGCAGGTGGGCAAGGTACGGAAATTCGAGAG
TTTCGAGGAGTACATTCAAAAGTGTGCCACCAAATTGGATGCTCCCTGGT
TGGCAGCTGTTGAGAAAGAAGAACTTCAATCCCTGCTCCAGGAATATGCC
GTGCATAAATACTTCTTGGATCTGTTCTATCTGCTGCGCATGTCCTTTGC
TCCGGTGCTGGAGAGTCTAATTCTCCTGGATCGCCTGCTCTACCTCAAGG
AACTTGGCTATGAACGCAGCTATCTGATAGATTTATTTGATCCCGTCATT
TCGCCCAGGCATTTTGCAATTGTTTCTATAAAGCAGCAAACGCAACAATA
AAAGCTTTCTAGACCAT
BS19965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33964-RA | 1451 | CG33964-PA | 279..1451 | 329..1501 | 5850 | 99.9 | Plus |
| CG33964-RA | 1451 | CG33964-PA | 1..278 | 17..294 | 1390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33964-RA | 2245 | CG33964-RA | 874..2046 | 329..1501 | 5850 | 99.9 | Plus |
| CG13175-RA | 2245 | CG13175-RA | 874..2046 | 329..1501 | 5850 | 99.9 | Plus |
| CG33964-RA | 2245 | CG33964-RA | 595..873 | 16..294 | 1395 | 100 | Plus |
| CG13175-RA | 2245 | CG13175-RA | 595..873 | 16..294 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12184385..12185307 | 579..1501 | 4585 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12183233..12183511 | 16..294 | 1395 | 100 | Plus |
| 2R | 25286936 | 2R | 12183637..12183830 | 393..586 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 12183512..12183579 | 329..396 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:12 has no hits.
BS19965.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:30 Download gff for
BS19965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33964-RA | 596..873 | 17..294 | 100 | == | Plus |
| CG33964-RA | 874..2038 | 329..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:39 Download gff for
BS19965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13175-RA | 596..873 | 17..294 | 100 | == | Plus |
| CG13175-RA | 874..2038 | 329..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:56 Download gff for
BS19965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13175-RA | 596..873 | 17..294 | 100 | == | Plus |
| CG13175-RA | 874..2038 | 329..1493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:56 Download gff for
BS19965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12183234..12183511 | 17..294 | 100 | == | Plus |
| 2R | 12183512..12183577 | 329..394 | 100 | -> | Plus |
| 2R | 12183639..12183830 | 395..586 | 100 | -> | Plus |
| 2R | 12184393..12185299 | 587..1493 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:39 Download gff for
BS19965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8070739..8071016 | 17..294 | 100 | == | Plus |
| arm_2R | 8071017..8071082 | 329..394 | 100 | -> | Plus |
| arm_2R | 8071144..8071335 | 395..586 | 100 | -> | Plus |
| arm_2R | 8071898..8072804 | 587..1493 | 99 | | Plus |
BS19965.pep Sequence
Translation from 16 to 1500
> BS19965.pep
MSKVGVVQLQRRLDGLLAFLNPHWDFVNCHMVNYLTDQHWDGFLSETLKS
EIAGKEDVALAIEDLFWKTDESERFPAWREFLGKSKQERLSLHPKLLTSV
EELIEGQGNSTQLSIREFMSAKKCHEVDLTAVLVDQLVKNSGQDCFIVDA
GDGKGYLSSRLALQYGHRVLGIDANAANTENALNRNRKLQRAWNGLTERA
ELQVQGITPKRRSKKSPARESTKSAPALENYKTTAKFITTELNFGALLAE
NFTQFRPEDSPNICLTGLHTCGNLAATCLQVFHAQTDCRLLCNVGCCYHL
LRERYSQQEFFGNKSLMELQTDYGFPLSQYLRERQVRMGRNARMLAAQSI
ERTLDTKELPNVTLYYRALLEILVCRHAPELKNELQVGKVRKFESFEEYI
QKCATKLDAPWLAAVEKEELQSLLQEYAVHKYFLDLFYLLRMSFAPVLES
LILLDRLLYLKELGYERSYLIDLFDPVISPRHFAIVSIKQQTQQ*
BS19965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33964-PA | 494 | CG33964-PA | 1..494 | 1..494 | 2564 | 100 | Plus |
| CG2906-PE | 364 | CG2906-PE | 26..363 | 122..489 | 212 | 25.9 | Plus |
| CG2906-PD | 456 | CG2906-PD | 118..455 | 122..489 | 212 | 25.9 | Plus |
