BS19966.complete Sequence
1238 bp assembled on 2011-01-07
GenBank Submission: KX800629
> BS19966.complete
GAAGTTATCAGTCGACATGGATAGTGAGTTCCTGGAGCTGACGCAGCTGC
TGCCCCGCTGGGTGGATCTGGAAAATGTGGTCCGTGGTGAAGTCGAGGCG
CGCTACATACTCAAAAGAGCCGCGGATCACCTGGCGAACTTGAGGTCTGG
CGGAGATTCCGGGGCGGAGGAAACCGGATATCTGGTAGGTGCGCTGGTGG
ACAGGAACTGGGAACGCATTCACACAGGGCACTTCAGCCAGGTTCCCTTG
GTCACGAGGAAGATATACGCCATAGCCTGTTGCTTCAAGATTTTTTTCCT
TCTCTTGGAGAGCACTAGTCCCGCCCAGAAGGATGCGTGCAGTGAGATCC
TCGATGAGGCTCAACTTTTGGGTTGCATGGAGGATTGGAGTGAACTGAAA
GTCGCCCTAATGGATTATCTCGACAAGGATGGAGCAGTAGCACTGAATTC
CGCACCACTTCCAACTCTAGAGCCATTAACCCGAGTAACCTCCAACTGTG
ATATACCCCAACTGGACGCTCCCAGTCTAGAAGAGTTCCAGACAAAGTGC
TTTGAGGCAGGACAACCCACACTCCTGCTCAACACCATCCAGCATTGGCC
TGCACTGCACAAATGGCTGGATCTCAATTACCTTCTCCAAGTGGCCGGGA
ATCGCACGGTGCCCATTGAAATAGGTTCCAACTATGCCAGCGATGAATGG
TCCCAGCAGCTGGTGAAGATCCGCGACTTCCTGAGCAGACAATTCGGAAA
GGAACCAAGCAAGGCTGGCCAAAATATCGAGTATCTCGCTCAGCACGAGC
TCTTCGCCCAGATACCAGCCCTCAAAGAGGATATATCCATTCCCGACTAC
TGCACCATCAGCAACGAAGATACCCCAGGAGCTGTGGACATCAAAGCCTG
GCTGGGACCAGCTGGAACCGTATCTCCCATGCACTACGATCCCAAGCACA
ACTTGCTGTGCCAGGTATTCGGTTCGAAGAGGATCATCCTAGCTGCTCCT
GCAGACACAGACAATCTGTATCCCCACGACAGTGAGTTTTTGGCCAATAC
AGCGCGAATAGATGCTGCTCAACTGGATCCTGAAACATATCCCTTGGTAG
CCAAGGTGAAGTTCTACCAGCTGCTCCTGCAACCTGGTGACTGTTTGTAC
ATGCCACCCAAATGGTGGCACTATGTGAGATCTGAAGCTCCTAGCTTCTC
TGTAAGCTTCTGGTGGGAGTAAAAGCTTTCTAGACCAT
BS19966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13902-RB | 1206 | CG13902-PB | 1..1206 | 17..1222 | 6030 | 100 | Plus |
| CG13902-RC | 1185 | CG13902-PC | 1..1185 | 17..1222 | 5680 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13902-RB | 1330 | CG13902-RB | 47..1252 | 17..1222 | 6030 | 100 | Plus |
| CG13902-RC | 1309 | CG13902-RC | 47..1231 | 17..1222 | 5680 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 840058..840992 | 1222..288 | 4675 | 100 | Minus |
| 3L | 28110227 | 3L | 841042..841314 | 289..17 | 1365 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2195..2233 | 523..561 | 123 | 79.5 | Plus |
BS19966.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:32 Download gff for
BS19966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13902-RB | 48..1251 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:21 Download gff for
BS19966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13902-RB | 47..1250 | 17..1220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:12 Download gff for
BS19966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13902-RB | 47..1250 | 17..1220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:12 Download gff for
BS19966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 840060..840990 | 290..1220 | 100 | <- | Minus |
| 3L | 841042..841314 | 17..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:21 Download gff for
BS19966.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 840060..840990 | 290..1220 | 100 | <- | Minus |
| arm_3L | 841042..841314 | 17..289 | 100 | | Minus |
BS19966.pep Sequence
Translation from 16 to 1221
> BS19966.pep
MDSEFLELTQLLPRWVDLENVVRGEVEARYILKRAADHLANLRSGGDSGA
EETGYLVGALVDRNWERIHTGHFSQVPLVTRKIYAIACCFKIFFLLLEST
SPAQKDACSEILDEAQLLGCMEDWSELKVALMDYLDKDGAVALNSAPLPT
LEPLTRVTSNCDIPQLDAPSLEEFQTKCFEAGQPTLLLNTIQHWPALHKW
LDLNYLLQVAGNRTVPIEIGSNYASDEWSQQLVKIRDFLSRQFGKEPSKA
GQNIEYLAQHELFAQIPALKEDISIPDYCTISNEDTPGAVDIKAWLGPAG
TVSPMHYDPKHNLLCQVFGSKRIILAAPADTDNLYPHDSEFLANTARIDA
AQLDPETYPLVAKVKFYQLLLQPGDCLYMPPKWWHYVRSEAPSFSVSFWW
E*
BS19966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13902-PB | 401 | CG13902-PB | 1..401 | 1..401 | 2139 | 100 | Plus |
| CG13902-PC | 394 | CG13902-PC | 1..394 | 1..401 | 2088 | 98.3 | Plus |
| CG10133-PA | 316 | CG10133-PA | 31..294 | 169..401 | 204 | 24.7 | Plus |
