BS19973.complete Sequence
1259 bp assembled on 2011-01-07
GenBank Submission: KX804725
> BS19973.complete
GAAGTTATCAGTCGACATGTTGCATCCGAAACTTGGTCGCGTGATGAACG
TGGTCTACTACCATTCCGTTGTCTTCGCCCTAATGAGCACTACCCTAAGG
ATACGCTCCTGCAGGAAATGCCTACGCTTGGAAAAGGTCTCGCGAACTTA
CACCATCTACAGTTTCTTTGTGGGCATATTCCTGTTTCTAAACTTGTACT
TCATGGTGCCTCGGATCATGGAAGATGGCTACATGAAGTACAACATAGTC
CTGCAGTGGAACTTCTTTGTGATGCTCTTCCTTAGAGCCATCGCTGTGGT
GAGCTGCTATGGAACCCTGTGGCTAAAGCGCCACAAAATCATTCAGCTCT
ATAAATACTCGCTGATATATTGGAAGAGGTTCGGACACATAACGAGGGCC
ATAGTGGACAAGAAAGAACTCCTTGACCTACAAGAGTCCTTGGCCAGAAT
AATGATCCGGAAAATAATATTACTCTATAGTGCTTTTCTGTGCTCCACTG
TGTTGCAGTATCAATTGCTCAGTGTGATTAACCCACAGATTTTCCTGGCT
TTCTGTGCCCGGCTCACGCACTTTCTGCACTTCTTGTGCGTGAAAATGGG
TTTCTTCGGGGTACTGGTTCTACTGAATCATCAATTTTTGGTAATCCATC
TGGCCATAAACGCTCTTCATGGTAGGAAAGCCCGGAAGAAATGGAAAGCT
CTGCGTTCCGTAGCCGCCATGCATCTGAAAACCCTTCGATTAGCCAGAAG
GATCTTTGACATGTTTGACATCGCTAATGCCACGGTGTTTATCAACATGT
TTATGACCGCTATTAATATCCTTTATCATGCCGTCCAGTACAGCAATAGC
AGCATCAAGTCAAATGGTTGGGGCATCTTATTTGGCAACGGATTGATCGT
TTTCAACTTCTGGGGCACCATGGCGCTGATGGAAATGCTGGATAGTGTGG
TGACCTCCTGCAACAACACTGGCCAGCAACTAAGGCAACTTAGCGATCTA
CCAAAAGTGGGTCCAAAGATGCAAAGGGAGTTGGATGTTTTTACCATGCA
GCTGAGGCAGAATCGGTTGGTCTACAAAATATGCGGAATTGTGGAGCTGG
ACAAACCCGCTTGCCTTAGTTATATTGGCTCCATTCTGAGCAACGTCATT
ATCCTCATGCAGTTCGATTTGAGACGGCAAAGACAACCCATCAATGATCG
TCAATATCTCATCCATTTGATGAAGAACAAAACAAAAGTGTAAAAGCTTT
CTAGACCAT
BS19973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr58b-RA | 1227 | CG13495-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr58b-RA | 1406 | CG13495-RA | 5..1233 | 16..1244 | 6145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21978659..21979673 | 1030..16 | 5075 | 100 | Minus |
| 2R | 25286936 | 2R | 21978388..21978603 | 1244..1029 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:23:42 has no hits.
BS19973.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:33 Download gff for
BS19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr58b-RA | 19..1222 | 22..1225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:25 Download gff for
BS19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr58b-RA | 11..1214 | 22..1225 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:20 Download gff for
BS19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr58b-RA | 11..1214 | 22..1225 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:20 Download gff for
BS19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21978407..21978601 | 1031..1225 | 100 | <- | Minus |
| 2R | 21978659..21979667 | 22..1030 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:25 Download gff for
BS19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17865912..17866106 | 1031..1225 | 100 | <- | Minus |
| arm_2R | 17866164..17867172 | 22..1030 | 100 | | Minus |
BS19973.pep Sequence
Translation from 16 to 1242
> BS19973.pep
MLHPKLGRVMNVVYYHSVVFALMSTTLRIRSCRKCLRLEKVSRTYTIYSF
FVGIFLFLNLYFMVPRIMEDGYMKYNIVLQWNFFVMLFLRAIAVVSCYGT
LWLKRHKIIQLYKYSLIYWKRFGHITRAIVDKKELLDLQESLARIMIRKI
ILLYSAFLCSTVLQYQLLSVINPQIFLAFCARLTHFLHFLCVKMGFFGVL
VLLNHQFLVIHLAINALHGRKARKKWKALRSVAAMHLKTLRLARRIFDMF
DIANATVFINMFMTAINILYHAVQYSNSSIKSNGWGILFGNGLIVFNFWG
TMALMEMLDSVVTSCNNTGQQLRQLSDLPKVGPKMQRELDVFTMQLRQNR
LVYKICGIVELDKPACLSYIGSILSNVIILMQFDLRRQRQPINDRQYLIH
LMKNKTKV*
BS19973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr58b-PA | 408 | CG13495-PA | 1..408 | 1..408 | 2106 | 100 | Plus |
| Gr58a-PA | 395 | CG30396-PA | 32..395 | 43..393 | 347 | 24.3 | Plus |
