BS19974.complete Sequence
689 bp assembled on 2011-01-07
GenBank Submission: KX803876
> BS19974.complete
GAAGTTATCAGTCGACATGTGTTTTTGCTGTGCTCGATTAATTAGTGGAT
CGTCACGGAACTGGAGTTATAAAGTAAGCCGACGGTGCCAGACGAAGCTC
AGACTGACTAAAAAAATGGCCCGGCATATAGCCCTGCTGATCTGCTCATT
GCTAGCGATGGCTGGCTGTGATCCAATCGATGTGGACTGTACTCGCAGAC
AGGATTTCAATATTGTCAAGGACTGCTGTGTCTATCCCACATTTAGGTTT
GACCAGTTCAAAAGCCAGTGTGGTAAATATATGCCAGTTGGTGCTCCCAG
AATTTCACCCTGCCTCTATGAATGCATTTTCAATAAGACCAACACAGTTG
TGGACGGAGCTATTCATCCTGACAATGCCCGACTCATGCTGGAGAAGCTT
TTCGGTAATCAGGACTTTGAAGAAGCCTATTTCAATGGTTTAATGGGCTG
TTCGGATTCTGTGCAAGAGATGATTAGCAACAGGAGGTCACGGCCCCAAA
GAAAAACAGAACAATGCTCTCCATTCTCACTTTTCTATGGAATTTGTGCC
CAGAGATATGTCTTCAACCATTGTCCATCATCCAGCTGGTCCGGCACTGA
ATCTTGCGAAATGGCCCGATTGCAGAACATGAACTGTTCGAAACCATCAC
GTGGTTCTAGTCATCGCCTTTAAAAGCTTTCTAGACCAT
BS19974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50c-RC | 558 | CG30072-PC | 1..558 | 116..673 | 2790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50b-RB | 1648 | CG30073-RB | 960..1617 | 17..674 | 3290 | 100 | Plus |
| Obp50c-RC | 1648 | CG30072-RC | 960..1617 | 17..674 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14372612..14372975 | 311..674 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 14372199..14372393 | 17..211 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 14372457..14372555 | 212..310 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:23:51 has no hits.
BS19974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:34 Download gff for
BS19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50c-RB | 960..1614 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:27 Download gff for
BS19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50c-RB | 960..1614 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:24 Download gff for
BS19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp50c-RC | 960..1614 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:24 Download gff for
BS19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14372457..14372555 | 212..310 | 100 | -> | Plus |
| 2R | 14372199..14372393 | 17..211 | 100 | -> | Plus |
| 2R | 14372612..14372972 | 311..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:27 Download gff for
BS19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10259704..10259898 | 17..211 | 100 | -> | Plus |
| arm_2R | 10259962..10260060 | 212..310 | 100 | -> | Plus |
| arm_2R | 10260117..10260477 | 311..671 | 100 | | Plus |
BS19974.pep Sequence
Translation from 16 to 672
> BS19974.pep
MCFCCARLISGSSRNWSYKVSRRCQTKLRLTKKMARHIALLICSLLAMAG
CDPIDVDCTRRQDFNIVKDCCVYPTFRFDQFKSQCGKYMPVGAPRISPCL
YECIFNKTNTVVDGAIHPDNARLMLEKLFGNQDFEEAYFNGLMGCSDSVQ
EMISNRRSRPQRKTEQCSPFSLFYGICAQRYVFNHCPSSSWSGTESCEMA
RLQNMNCSKPSRGSSHRL*
BS19974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp50c-PC | 185 | CG30072-PC | 1..185 | 34..218 | 1015 | 100 | Plus |
| Obp50d-PA | 173 | CG30074-PA | 1..170 | 34..207 | 286 | 30.5 | Plus |
