BS19975.complete Sequence
686 bp assembled on 2011-01-07
GenBank Submission: KX801575
> BS19975.complete
GAAGTTATCAGTCGACATGGATCCTGCAACAAACTGTCGATATTCACTAG
CCTATGGCGCCCTCTTTATTTTGCTGCTCCAACTGTGTTTTGAATCCGTG
GAATGCCTGACAATGACCGAAATCAAAATCCCCAAGCACATTATGCGCCA
CGAGGATGCCGTGCTCGGGTGCAAGTTCGATCTGGACGGGGAGTCACTGT
ACTCGGTCAAGTGGTACAAGGATGGCTTTGAGTTCTACCGCTATGTGCCC
AGGGACATGCCGCCGGGCCAGGTTTTTCCGCTGCCAGGAGTGGACGTTGA
GTTACAAAACTCGACGGACGTGGTCGTTGTTCTGCGCTCAGTTAGCCTTC
AGTCAACTGGCCGATATCGCTGCGAGGTGTCCGGCGAGGCGCCTTCGTTT
CAGACGGTTTCCGGTCACGAGGACATGATTGTTGTGGTGACCCCGAAGCA
TGGACCACAAATCACTGGCGGACAGCCGCGGTACCAAATTGGCGACATGG
TCCGCGTCAATTGCACCTCGGCGGCATCAAGGCCGGTCTGCCATCTCAGC
TGGCTGATTAACGGGATGCACGCGAACCGTTCGCTGCTGCGACCTTATGA
ACCACTGATTGTGGGTCGCGAGGGTCTGGAGGTCGCCCGATTGGGCCTGG
AGTTCCGGGTGAGAGGATGAAAGCTTTCTAGACCAT
BS19975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIb-RD | 1215 | CG33179-PD | 1..654 | 17..670 | 3255 | 99.8 | Plus |
| beat-IIIb-RC | 654 | CG33179-PC | 1..654 | 17..670 | 3255 | 99.8 | Plus |
| beat-IIIa-RE | 1032 | CG12621-PE | 214..672 | 107..565 | 360 | 71.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIb-RD | 3249 | CG33179-RD | 1092..1746 | 16..670 | 3260 | 99.8 | Plus |
| beat-IIIb-RC | 3249 | CG33179-RC | 1092..1746 | 16..670 | 3260 | 99.8 | Plus |
| beat-IIIa-RE | 4457 | CG12621-RE | 950..1408 | 107..565 | 360 | 71.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16990240..16990473 | 437..670 | 1170 | 100 | Plus |
| 2L | 23513712 | 2L | 16984609..16984818 | 92..301 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 16986013..16986150 | 300..437 | 675 | 99.3 | Plus |
| 2L | 23513712 | 2L | 16976974..16977050 | 16..92 | 385 | 100 | Plus |
| 2L | 23513712 | 2L | 17196912..17196998 | 264..178 | 240 | 85.1 | Minus |
| 2L | 23513712 | 2L | 17169813..17169941 | 437..565 | 210 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:23:59 has no hits.
BS19975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:35 Download gff for
BS19975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIb-RC | 1093..1745 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:30 Download gff for
BS19975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIb-RC | 1093..1745 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:27 Download gff for
BS19975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIb-RC | 1093..1745 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:27 Download gff for
BS19975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16986015..16986150 | 302..437 | 99 | -> | Plus |
| 2L | 16976975..16977050 | 17..92 | 100 | -> | Plus |
| 2L | 16984610..16984818 | 93..301 | 100 | -> | Plus |
| 2L | 16990241..16990472 | 438..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:30 Download gff for
BS19975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16976975..16977050 | 17..92 | 100 | -> | Plus |
| arm_2L | 16984610..16984818 | 93..301 | 100 | -> | Plus |
| arm_2L | 16986015..16986150 | 302..437 | 99 | -> | Plus |
| arm_2L | 16990241..16990472 | 438..669 | 100 | | Plus |
BS19975.pep Sequence
Translation from 16 to 669
> BS19975.pep
MDPATNCRYSLAYGALFILLLQLCFESVECLTMTEIKIPKHIMRHEDAVL
GCKFDLDGESLYSVKWYKDGFEFYRYVPRDMPPGQVFPLPGVDVELQNST
DVVVVLRSVSLQSTGRYRCEVSGEAPSFQTVSGHEDMIVVVTPKHGPQIT
GGQPRYQIGDMVRVNCTSAASRPVCHLSWLINGMHANRSLLRPYEPLIVG
REGLEVARLGLEFRVRG*
BS19975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIb-PC | 217 | CG33179-PC | 1..217 | 1..217 | 1152 | 100 | Plus |
| beat-IIIb-PD | 404 | CG33179-PD | 1..217 | 1..217 | 1152 | 100 | Plus |
| beat-IIIa-PE | 343 | CG12621-PE | 72..257 | 31..216 | 730 | 71.5 | Plus |
| beat-IIIa-PD | 343 | CG12621-PD | 72..257 | 31..216 | 730 | 71.5 | Plus |
| beat-IIIc-PB | 361 | CG15138-PB | 25..210 | 31..215 | 615 | 61.3 | Plus |
