BS19976.complete Sequence
1916 bp assembled on 2011-01-28
GenBank Submission: KX802391
> BS19976.complete
GAAGTTATCAGTCGACATGGTGGAATCCTCGAGTCTGGGGAGGACCCCGC
CGGCGGCCCAGCAGCCCATTCCGCAGCAGCACTCCCCTTCGCCATCAGGA
CTGCGATGCGGCAACATGGAGACGCGTGTTCGCGGCGCCTGGTACCGCGT
CCTGGTCACGCTGGAAACTGACTTCCTGGCCGTCAGCCTGGACGAGTCCT
GTGAGGCGGCGCAGCCATCGAACGATGGACAGTCTACTACCTTAAATGGA
ACCTTGGGAAGCAATCACAGTGGCGGAGGAGGCGGTGGCGCAGGCGGTGG
TGGCACAGGTGGAGGTGGCCAGAACGGCACCCTGCCCAATTCCGCGTCGC
TGCAGGGCATGAATATCCAGGATACAGAGCTAGACGGCTCCGCTAGCAAC
GACAATGGGGACCGCGATCCTTGCCTGAACAACAACAACAATGCTGGCGA
CGGTGGCGGAATGGATATGTGCGACGTACCTGACCATGTGGCCAACCAGA
AGCGGCATGTGCGGATCATCAAGTCGGACAACAACGGCCTGGGTATCTCC
ATCAAGGGCGGCCGGGAGAACCGCATGCCCATCCTCATCTCGAAGATCTT
CCGGGGCATGGCCGCCGACCAGGCCAAGGGACTCTACGTCGGCGACGCCA
TCCTGACCGTCAACGGAGAGGAGTTACGTGACGCCACCCACGACGAGGCG
GTGAGGGCCCTCAAGCGGTCCGGTCGAGTGGTAGATCTGGAAGTTAAATT
CCTGCGCGAAGTGACGCCCTACTTTCGGAAGGCAAGCATCATCTCGGAAG
TGGGTTGGGAGCTCCAGCGGGCCTTCCTCTGTCCGCTGGGACCAGGCGTA
CCCACGTCGCCGCCCGCCCCCAAGACGACACCCCGGGCGGATACGCGATA
CATCCCGCTGCAGCTGACGCATCTGGCCAGGAATCTCAAATACATCGACC
CGGAAAACCGGTGCTTCGAGTTGCATTCGCCCGACGGAGTGCACTCTTGC
ATCCTGCGGGCAGCGGACTCGGCGGAGGCCCTCGTCTGGTTCAATGCCCT
CCACTCGGCGATGGGCACCAGCACGCAGCGCGCTTTGGCCGAGGCCAATC
GGGCGCTTACCAACCTCATCGGCGAACTGAAGCACATTGGATGGCTGAGC
AAGCGGATGAGCGGCGGAGGAAGTTCTGGTAGCGCCGGGGGCGGAGCGGC
TAGCGGAGGCAGCGGCACCTCGAACAGCGTTGTAGCCGGCGAGTTGGTAA
GTCCCAGCGGTCGTTCCAGTTCCGAGAGCTCCGATGAGAGTGACAAGTGG
CTGCCCATATTCGTGGCGGTTACGGAGCGTGAGTTCCGGATATACGAGAG
TGCTCCCTGGTCGGTGGAGGCCTGGAGTCGGCCCCTGGAAATCTACGCCC
TGGCCACAACGCGCCTGGCAGGAGCCGGCAACAATTCCTCCCTGAACGGC
CAGCAGACCACAGTGTTCTGCGTCCGATGCGGCACCGCCCGCGGAGTGCT
CGTCTATTGGCTTCGCTCAGAGACGCACCGGGACATGGCCGCCTGGGCCA
GGTCTCTCGTCCAGGGCTCCCACCAGGCGGTCAACTACCAGAGGGAGTTC
TCCTTCCGCTGCCTGTTCCAGGGCCGGCAGTGTCAATTGGTTGTGCACAT
AAACCGAGGCTTCTTTCTGTACGACTGCGGTGGATTCGCTCCAACCACTC
CGACGGTAGCCACCGCCAAGACGCAGTTGTGGCAGTTCGCCTTCGACAAG
CTGAAGGGTTCCGCCGATGACGGCGCCAGGATGTTGTATCTGGACTTTGG
CGAGGATGGAGAGATTGAACTGGACATGGAGTGTTGTCCCAAGCCGGTTG
TCTTCGTCGTGCACAATTGCCTGTCGGCCAAAGTTCACAATATCGCCTAG
AAGCTTTCTAGACCAT
BS19976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn1-RD | 1884 | CG7152-PD | 1..1884 | 17..1900 | 9375 | 99.8 | Plus |
| Syn1-RB | 1884 | CG7152-PB | 1..1884 | 17..1900 | 9375 | 99.8 | Plus |
| Syn1-RC | 1878 | CG7152-PC | 1..1878 | 17..1900 | 9250 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn1-RD | 3741 | CG7152-RD | 683..2567 | 16..1900 | 9380 | 99.8 | Plus |
| Syn1-RB | 3213 | CG7152-RB | 155..2039 | 16..1900 | 9380 | 99.8 | Plus |
| Syn1-RC | 3735 | CG7152-RC | 683..2561 | 16..1900 | 9255 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21760031..21760516 | 743..258 | 2430 | 100 | Minus |
| 3L | 28110227 | 3L | 21746668..21747037 | 1817..1448 | 1835 | 99.7 | Minus |
| 3L | 28110227 | 3L | 21747502..21747801 | 1252..953 | 1485 | 99.7 | Minus |
| 3L | 28110227 | 3L | 21760958..21761200 | 258..16 | 1200 | 99.6 | Minus |
| 3L | 28110227 | 3L | 21747992..21748203 | 953..742 | 1060 | 100 | Minus |
| 3L | 28110227 | 3L | 21747102..21747297 | 1448..1253 | 980 | 100 | Minus |
| 3L | 28110227 | 3L | 21746533..21746616 | 1900..1817 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6032..6099 | 396..463 | 123 | 68.1 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7487..7554 | 396..463 | 114 | 66.7 | Plus |
BS19976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:52 Download gff for
BS19976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn1-RB | 156..2039 | 17..1900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:49 Download gff for
BS19976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn1-RB | 156..2039 | 17..1900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:58 Download gff for
BS19976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syn1-RB | 156..2039 | 17..1900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:58 Download gff for
BS19976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21746533..21746616 | 1817..1900 | 100 | <- | Minus |
| 3L | 21746669..21747037 | 1448..1816 | 99 | <- | Minus |
| 3L | 21747103..21747297 | 1253..1447 | 100 | <- | Minus |
| 3L | 21747502..21747800 | 954..1252 | 99 | <- | Minus |
| 3L | 21747992..21748201 | 744..953 | 100 | <- | Minus |
| 3L | 21760031..21760515 | 259..743 | 100 | <- | Minus |
| 3L | 21760958..21761199 | 17..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:49 Download gff for
BS19976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21739633..21739716 | 1817..1900 | 100 | <- | Minus |
| arm_3L | 21739769..21740137 | 1448..1816 | 99 | <- | Minus |
| arm_3L | 21740203..21740397 | 1253..1447 | 100 | <- | Minus |
| arm_3L | 21740602..21740900 | 954..1252 | 99 | <- | Minus |
| arm_3L | 21741092..21741301 | 744..953 | 100 | <- | Minus |
| arm_3L | 21753131..21753615 | 259..743 | 100 | <- | Minus |
| arm_3L | 21754058..21754299 | 17..258 | 99 | | Minus |
BS19976.pep Sequence
Translation from 16 to 1899
> BS19976.pep
MVESSSLGRTPPAAQQPIPQQHSPSPSGLRCGNMETRVRGAWYRVLVTLE
TDFLAVSLDESCEAAQPSNDGQSTTLNGTLGSNHSGGGGGGAGGGGTGGG
GQNGTLPNSASLQGMNIQDTELDGSASNDNGDRDPCLNNNNNAGDGGGMD
MCDVPDHVANQKRHVRIIKSDNNGLGISIKGGRENRMPILISKIFRGMAA
DQAKGLYVGDAILTVNGEELRDATHDEAVRALKRSGRVVDLEVKFLREVT
PYFRKASIISEVGWELQRAFLCPLGPGVPTSPPAPKTTPRADTRYIPLQL
THLARNLKYIDPENRCFELHSPDGVHSCILRAADSAEALVWFNALHSAMG
TSTQRALAEANRALTNLIGELKHIGWLSKRMSGGGSSGSAGGGAASGGSG
TSNSVVAGELVSPSGRSSSESSDESDKWLPIFVAVTEREFRIYESAPWSV
EAWSRPLEIYALATTRLAGAGNNSSLNGQQTTVFCVRCGTARGVLVYWLR
SETHRDMAAWARSLVQGSHQAVNYQREFSFRCLFQGRQCQLVVHINRGFF
LYDCGGFAPTTPTVATAKTQLWQFAFDKLKGSADDGARMLYLDFGEDGEI
ELDMECCPKPVVFVVHNCLSAKVHNIA*
BS19976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syn1-PD | 627 | CG7152-PD | 1..627 | 1..627 | 3308 | 100 | Plus |
| Syn1-PB | 627 | CG7152-PB | 1..627 | 1..627 | 3308 | 100 | Plus |
| Syn1-PC | 625 | CG7152-PC | 1..625 | 1..627 | 3287 | 99.7 | Plus |
| Syn1-PE | 624 | CG7152-PE | 1..624 | 1..627 | 3271 | 99.5 | Plus |
| Syn2-PB | 514 | CG4905-PB | 69..503 | 160..626 | 308 | 23.6 | Plus |
