BS19978.complete Sequence
1592 bp assembled on 2011-01-07
GenBank Submission: KX801169
> BS19978.complete
GAAGTTATCAGTCGACATGGAACTGGTACTGCTGATCCTCGTGGCATCCC
TAATAGGGATTGCCTTTCTGGCGCTGCAGCAGCATTACTCCTATTGGCGG
CGAATGGGAGTACGCGAAATCAGGCCCAAATGGATAGTGGGCAACCTGAT
GGGACTGCTCAACATGCGAATGAGTCCCGCGGAGTTCATATCGCAATTGT
ATAACCATCCCGATGCGGAGAACGAACCCTTCGTGGGCATCCATGTGTTC
CACAAGCCGGCGCTGCTTTTGAGAGACCCCGAAATGGTGAGAAATATCCT
GGTCAAGGACTTCGCTGGCTTCTCCAACCGGTACTCGAGCTCCGACCCCA
AGGGCGACCCTTTGGGATCCCAGAACATATTCTTCCTGAAGAATCCCGCC
TGGAAGGAGGTACGTTTGAAGCTATCGCCCTTCTTCACCGGCAATCGACT
GAAGCAGATGTTTCCCCTGATCGAGGAGGTGGGCGCCAGCTTGGATGCCC
ATCTCCGCCAGCAGCCGCTGCACAACGAGCGGATGCGCTGCTTCGACTTG
GAGGCCAAGGAGCTGTGTGCTCTCTACACCACGGATGTGATAGCCACGGT
AGCGTACGGAGTGAGTGCCAACAGTTTCACGGATCCGAAGTGCGAGTTCC
GCCGCCATGGACGTTCTGTGTTCGAGTTCAACCTGCTGCGTGCCGCGGAG
TTCACTCTAGTGTTTTTCCTGCCCCACCTGGTCCCGTTCGTTAGATTCAA
GGTGGTGCCGGCGGAGGCCACTCGTTTTCTGCGCAAGACCATCAACTATG
TGATGTCGGAGCGGGAAAAATCCGGACAGAAGCGCAACGATCTCATCGAC
ATTCTCATTGAGTTCCGTAGGAGCACGCAGCTGGCGAAGGCATCGGGTAT
CAAGGATCAATTTGTGTTCGAGGGCGACATCCTGGTCGCCCAGGCGGTAC
TCTTCTTCACCGCCGGCTTTGAGTCCTCCTCCTCGACCATGGCGTTCGCG
ATGTACGAGTTGGCCAAGGATACGGACGTACAGCAGCGCCTGCGGGAGGA
GATCAAGGATGCACTGGTCGAAAGTGGAGGTCAGGTGACGCTGAAGATGA
TCGAGTCACTGGAGTTCATGCAAATGATTCTGCTGGAGGTGCTGCGCATG
TATCCGCCACTGCCGTTTTTGGATCGCGAGTGCACTTCTGGGAGGGATTA
CTCGCTGGCTCCGTTCCACAAAAAGTTCGTGGTGCCCAAGGGCATGCCCG
TTTATATACCCTGCTATGCCCTGCACATGGATCCCCAGTACTTTCCTCAA
CCGCGAAAATTTCTGCCTGAAAGATTCTCGCCCGAGAATCGCAAGCTCCA
CACGCCCTACACCTACATGCCCTTCGGCCTGGGTCCGCATGGCTGCATCG
GAGAACGTTTTGGATATCTCCAGGCGAAGGTGGGTCTGGTTAACCTGCTG
CGCAACCACATGATAACCACCTCGGAGCGCACACCCCATCGCATGCAGCT
GGATCCCAAGGCCATCATAACCCAAGCCAAGGGCGGCATCCACCTACGGC
TGGTTCGCGATGCTTTGGGCGTCTAAAAGCTTTCTAGACCAT
BS19978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6g2-RA | 1560 | CG8859-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| Cyp6g1-RB | 1575 | CG8453-PB | 898..1028 | 926..1056 | 205 | 77.1 | Plus |
| Cyp6g1-RA | 1575 | CG8453-PA | 898..1028 | 926..1056 | 205 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6g2-RA | 1989 | CG8859-RA | 15..1575 | 16..1576 | 7805 | 100 | Plus |
| Cyp6g1-RB | 2074 | CG8453-RB | 1103..1233 | 926..1056 | 205 | 77.1 | Plus |
| Cyp6g1-RA | 2061 | CG8453-RA | 1090..1220 | 926..1056 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12189091..12190363 | 1288..16 | 6365 | 100 | Minus |
| 2R | 25286936 | 2R | 12188752..12189043 | 1576..1285 | 1460 | 100 | Minus |
| 2R | 25286936 | 2R | 12187400..12187530 | 926..1056 | 205 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:22 has no hits.
BS19978.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:31 Download gff for
BS19978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6g2-RA | 16..1573 | 17..1574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:41 Download gff for
BS19978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6g2-RA | 16..1573 | 17..1574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:46:00 Download gff for
BS19978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6g2-RA | 16..1573 | 17..1574 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:46:00 Download gff for
BS19978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12188754..12189039 | 1289..1574 | 100 | <- | Minus |
| 2R | 12189091..12190362 | 17..1288 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:41 Download gff for
BS19978.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8076259..8076544 | 1289..1574 | 100 | <- | Minus |
| arm_2R | 8076596..8077867 | 17..1288 | 100 | | Minus |
BS19978.pep Sequence
Translation from 16 to 1575
> BS19978.pep
MELVLLILVASLIGIAFLALQQHYSYWRRMGVREIRPKWIVGNLMGLLNM
RMSPAEFISQLYNHPDAENEPFVGIHVFHKPALLLRDPEMVRNILVKDFA
GFSNRYSSSDPKGDPLGSQNIFFLKNPAWKEVRLKLSPFFTGNRLKQMFP
LIEEVGASLDAHLRQQPLHNERMRCFDLEAKELCALYTTDVIATVAYGVS
ANSFTDPKCEFRRHGRSVFEFNLLRAAEFTLVFFLPHLVPFVRFKVVPAE
ATRFLRKTINYVMSEREKSGQKRNDLIDILIEFRRSTQLAKASGIKDQFV
FEGDILVAQAVLFFTAGFESSSSTMAFAMYELAKDTDVQQRLREEIKDAL
VESGGQVTLKMIESLEFMQMILLEVLRMYPPLPFLDRECTSGRDYSLAPF
HKKFVVPKGMPVYIPCYALHMDPQYFPQPRKFLPERFSPENRKLHTPYTY
MPFGLGPHGCIGERFGYLQAKVGLVNLLRNHMITTSERTPHRMQLDPKAI
ITQAKGGIHLRLVRDALGV*
BS19978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6g2-PA | 519 | CG8859-PA | 1..519 | 1..519 | 2702 | 100 | Plus |
| Cyp6g1-PB | 524 | CG8453-PB | 6..515 | 4..517 | 1253 | 47.8 | Plus |
| Cyp6g1-PA | 524 | CG8453-PA | 6..515 | 4..517 | 1253 | 47.8 | Plus |
| Cyp6w1-PB | 514 | CG8345-PB | 1..502 | 3..512 | 1047 | 40.2 | Plus |
| Cyp6w1-PA | 514 | CG8345-PA | 1..502 | 3..512 | 1047 | 40.2 | Plus |
