BS19979.complete Sequence
1811 bp assembled on 2011-01-28
GenBank Submission: KX800818
> BS19979.complete
GAAGTTATCAGTCGACATGGGTTCGTTATTAAAGGAGCTCGTATGCCAGA
TAAAAGAAATACAGTCCGATTTGAAGAATGACACCCATGTAGGTGCGACT
AACGGGGAATGGAGCCGAAAAGAAGTTCGCAAAATGAAGATTTGTTTAGG
GAAGGTAATTCTTTTCACAAGGTCCTTGAGGGAGACATTTGCGGAAAGTC
AAGAGTCCGGGAATCAAGAACAATCCTCGAAGGCTTTAGTTCTGTTACGA
TGTACTCGGTACATTAAGCGCTTGTCTATGGTCCTGACACTACTTGAGAC
TGAAGAAGGCTTAAATAAAGTGAATAAAACGCTCTTCCAACTGGACGTTG
ATACAATTCTTTTTGAACTGGAGTGTATTGTCAAGGAGGCCTTGAAATCT
CTTTCAGTGTCGCGATTCCCGTACCAAGAGTCATCTTGTACCACTACAGA
AACTTTAGTAAAAGAAAGTCCCATTTGTGAGTTGAATAAATTGCGGCTAA
TGTTGAAAAATGAGAAGAAAAAGCAGGAGCTAGAAATAATGGGCCACAAT
TTAATCATAATGAAGGAGAAAACTTTGGTTCTTCAGGCCCGTAAAAATCA
AAGGGCAGCGGAAAATAGACTAGCTGAGAAGCAGGATCGCATCAAGGCAC
TCGAAGAATGTCTAGCCAACTGCAAGTTTCAGTTGAAGAACGTCAACGAA
CAGTATCAGAAATTGAAGAAAGCCAGCAATCAATTAATAAGGGAAAGTAA
TCAGATTAGGCCACAGAAAAGTTGGAGTGTGCTAGTAGGGCGGAGAAAAG
GCAGAATATCGACTAGGACCAGTTTTGTATGGAAGTCGCTTAAGCTAGAT
CAATCGGAACGGGAAACTCTTATGGGTCTAAAGAAGCGCCTTAGTGAGGA
AAAAGAAATTAAGTTGAGAGCCAAGACTGAAATGAGTAAAATCAGAAAGG
CCATGGACGAGCTGTGTCTTGGTAAAGGAGAACTTCAATTTGGATTACAA
AATAAGAGTGAAACAGATGCCAGTAAGGATACCTTGGTTGTCATTGATAA
AGCCTTGAGTGCTCTTTCCCAATACAACACGCTTAAATTTCCGGATTGCA
ACTTCCAATTGAGCCGCCTTATGAAATCTCTTTATGGCAGCTTAACTACG
ATCCGAGATAGATGGATCCGAAAAATTAGCAGTGCAGTTGAACCAACACC
AAGCTGTTTAAAAAGTAATACTCCCTCATTACCAGAGCCCCCACTGACGG
TTTCTTTCTCAACCGACCTATTTTGGGACAAGATATACAAGCCCTGCACC
CAATCAAATCCTGTTATGCCCAATACGAGTTTGATCCCGGTTCTGCCGAA
GAAACAGCCAAAATCGTTACAGCTAACCTGTGAGCCTTCAGTTCAATACA
AAGTGGCGTCCCGCTCTTCCACTACAGCACCGGTGCCGAAGTACCTGGGA
AAAACATTCGGAGATCGACGTTTAAGCCTGCTCCGCTGGTGCCAAGAGAG
GGTTAAACCGTACGGAATTCCAATGTACGAGTTTAGTGCCTCATGGATTA
GTGGGCGTGCTTTGTGCGCCATCATCCACTCCTATCTTCCCGACCTCATT
GACAAAACATACCTCGCCAAAAAGAAGCCCGAAGAAGTCTTAGCATATGG
CATTAAAGTGGCCAAATCAATTGGTGTTTCTGATTCCGTCGATCTAATTA
GGGAGCTTCGGCAGGGGCGTCCCAACCTAGAGAAGATCGTCGATTTCGTG
GAGGAGCTGCAAGGCTATCTTGATATGTATGATACAAATATATGAAAGCT
TTCTAGACCAT
BS19979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn3-RA | 1662 | CG8953-PA | 1..1662 | 134..1795 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn3-RA | 1856 | CG8953-RA | 48..1838 | 5..1795 | 8910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16975903..16977446 | 1795..252 | 7720 | 100 | Minus |
| 3R | 32079331 | 3R | 16977499..16977748 | 254..5 | 1205 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:26:22 has no hits.
BS19979.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:52 Download gff for
BS19979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 60..1837 | 17..1794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:57 Download gff for
BS19979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 60..1837 | 17..1794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:08 Download gff for
BS19979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 60..1837 | 17..1794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:08 Download gff for
BS19979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16975904..16977446 | 252..1794 | 100 | <- | Minus |
| 3R | 16977502..16977736 | 17..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:57 Download gff for
BS19979.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12801626..12803168 | 252..1794 | 100 | <- | Minus |
| arm_3R | 12803224..12803458 | 17..251 | 100 | | Minus |
BS19979.pep Sequence
Translation from 16 to 1794
> BS19979.pep
MGSLLKELVCQIKEIQSDLKNDTHVGATNGEWSRKEVRKMKICLGKVILF
TRSLRETFAESQESGNQEQSSKALVLLRCTRYIKRLSMVLTLLETEEGLN
KVNKTLFQLDVDTILFELECIVKEALKSLSVSRFPYQESSCTTTETLVKE
SPICELNKLRLMLKNEKKKQELEIMGHNLIIMKEKTLVLQARKNQRAAEN
RLAEKQDRIKALEECLANCKFQLKNVNEQYQKLKKASNQLIRESNQIRPQ
KSWSVLVGRRKGRISTRTSFVWKSLKLDQSERETLMGLKKRLSEEKEIKL
RAKTEMSKIRKAMDELCLGKGELQFGLQNKSETDASKDTLVVIDKALSAL
SQYNTLKFPDCNFQLSRLMKSLYGSLTTIRDRWIRKISSAVEPTPSCLKS
NTPSLPEPPLTVSFSTDLFWDKIYKPCTQSNPVMPNTSLIPVLPKKQPKS
LQLTCEPSVQYKVASRSSTTAPVPKYLGKTFGDRRLSLLRWCQERVKPYG
IPMYEFSASWISGRALCAIIHSYLPDLIDKTYLAKKKPEEVLAYGIKVAK
SIGVSDSVDLIRELRQGRPNLEKIVDFVEELQGYLDMYDTNI*
BS19979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn3-PA | 553 | CG8953-PA | 1..553 | 40..592 | 2808 | 100 | Plus |
| CG13366-PE | 950 | CG13366-PE | 307..949 | 5..586 | 201 | 21.3 | Plus |
| CG13366-PA | 950 | CG13366-PA | 307..949 | 5..586 | 201 | 21.3 | Plus |
| CG13366-PF | 1094 | CG13366-PF | 451..1093 | 5..586 | 201 | 21.3 | Plus |
| CG13366-PC | 1094 | CG13366-PC | 451..1093 | 5..586 | 201 | 21.3 | Plus |
