BS19986.complete Sequence
374 bp assembled on 2011-01-07
GenBank Submission: KX805292
> BS19986.complete
GAAGTTATCAGTCGACATGTCGTTGCTGCTGCTCCTTTTGGCCGTCATCC
TGCCGCAGCGGCAGCTTCTGCCCTTCGTATCCGGAGGGTCCTGCCGGGAG
GCGCAGCTCTGCTGCAACGGCCGCGACTCGTCCTGCGTCGTCCAGAAGGC
TCCCATCAATGCCATCATCGAGGATCTCAGCGACAAGCCCTGCTACTGTG
ACCACGCCTGCCTCAAGCTCGGCGATTGCTGCGACGACTTCAAGGATCAC
TGTGGAGGAGTCTTTAGGCGCCGAAAACTGAAGTCCATCCATCTGGCAGC
CGGAAACTGCCATAAGCACGGATCCGTTAAGAATGCAGCTGCAATGGCAA
TGATTTGAAAGCTTTCTAGACCAT
BS19986.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42339-RA | 342 | CG42339-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
| CG42339-RB | 1188 | CG42339-PB | 1..241 | 17..257 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42339-RA | 656 | CG42339-RA | 97..438 | 17..358 | 1710 | 100 | Plus |
| CG42339-RB | 2354 | CG15204-RA | 145..385 | 17..257 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11037474..11037715 | 258..17 | 1210 | 100 | Minus |
| X | 23542271 | X | 11036108..11036210 | 358..256 | 515 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6931 | 136..8 | 116 | 57.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6846 | 70..18 | 113 | 73.6 | Minus |
BS19986.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:37 Download gff for
BS19986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42339-RA | 97..437 | 17..357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:38 Download gff for
BS19986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42339-RA | 97..437 | 17..357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:40 Download gff for
BS19986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42339-RA | 97..437 | 17..357 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:40 Download gff for
BS19986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11036109..11036208 | 258..357 | 100 | <- | Minus |
| X | 11037475..11037715 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:38 Download gff for
BS19986.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10930142..10930241 | 258..357 | 100 | <- | Minus |
| arm_X | 10931508..10931748 | 17..257 | 100 | | Minus |
BS19986.pep Sequence
Translation from 16 to 357
> BS19986.pep
MSLLLLLLAVILPQRQLLPFVSGGSCREAQLCCNGRDSSCVVQKAPINAI
IEDLSDKPCYCDHACLKLGDCCDDFKDHCGGVFRRRKLKSIHLAAGNCHK
HGSVKNAAAMAMI*
BS19986.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42339-PA | 113 | CG12626-PA | 1..113 | 1..113 | 611 | 100 | Plus |
| CG42339-PB | 395 | CG15204-PA | 1..80 | 1..80 | 441 | 100 | Plus |
