Clone BS19990 Report

Search the DGRC for BS19990

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:199
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG15357-RA
Protein status:BS19990.pep: full length peptide match
Sequenced Size:380

Clone Sequence Records

BS19990.complete Sequence

380 bp assembled on 2011-01-07

GenBank Submission: KX804300

> BS19990.complete
GAAGTTATCAGTCGACATGACTTGCGAAGTGCAGAATTTCATAGATGGCA
TGTCGCAGACTTTTTGTAAGCACAAAGAGATGCGCAAATGCCAAATGCTC
GAGATCCTGGACAAAGTGCGCTCCTGCGATTGCTGCCACAAAAGAAGGCT
AAACAACTGCCGGATGGTTAAGTCTGGAGGCCGGAAGCCCGCATCCCAGG
GCTGGACACTCTACCTCATCGCCGCCTGCTTCGCATTACTCCTGCTCATG
ATCATCTATATGATCCATGTGGCCAGAAGATATAACCATGTTCGAGCCTA
CGGCAGCAGCGCCTGCGGATCCACTTTGTTCTACAGCTACAGCGACTGCG
ATGTGTTCTACTAGAAGCTTTCTAGACCAT

BS19990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15357-RB 348 CG15357-PB 1..348 17..364 1740 100 Plus
CG15357-RA 348 CG15357-PA 1..348 17..364 1740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15357-RB 560 CG15357-RB 58..405 17..364 1740 100 Plus
CG15357-RA 485 CG15357-RA 58..405 17..364 1740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1945305..1945652 364..17 1740 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:25:18 has no hits.

BS19990.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:39 Download gff for BS19990.complete
Subject Subject Range Query Range Percent Splice Strand
CG15357-RA 58..405 17..364 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:46 Download gff for BS19990.complete
Subject Subject Range Query Range Percent Splice Strand
CG15357-RA 58..405 17..364 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:55 Download gff for BS19990.complete
Subject Subject Range Query Range Percent Splice Strand
CG15357-RA 58..405 17..364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:55 Download gff for BS19990.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1945305..1945652 17..364 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:46 Download gff for BS19990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1945305..1945652 17..364 100   Minus

BS19990.pep Sequence

Translation from 16 to 363

> BS19990.pep
MTCEVQNFIDGMSQTFCKHKEMRKCQMLEILDKVRSCDCCHKRRLNNCRM
VKSGGRKPASQGWTLYLIAACFALLLLMIIYMIHVARRYNHVRAYGSSAC
GSTLFYSYSDCDVFY*

BS19990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15357-PB 115 CG15357-PB 1..115 1..115 631 100 Plus
CG15357-PA 115 CG15357-PA 1..115 1..115 631 100 Plus