BS19991.complete Sequence
1316 bp assembled on 2011-01-07
GenBank Submission: KX806193
> BS19991.complete
GAAGTTATCAGTCGACATGGAGATATCCCAGCCCAGCATCGGCATCTTCT
ACATCAGCAAAGTGCTGGCCCTGGCTCCATATGCTACGGTCCGGAACTCC
AAGGGCCGGGTGGAAATTGGTCGCAGCTGGCTCTTCACTGTATACTCGGC
CACATTAACGGTGGTTATGGTTTTTCTCACTTATCGGGGTCTCCTGTTCG
ATGCTAACTCCGAAATTCCCGTGCGAATGAAGTCGGCTACGTCGAAGGTG
GTGACGGCCCTGGACGTGTCTGTGGTGGTCATGGCCATTGTATCCGGTGT
TTACTGTGGCCTTTTCAGCCTGAACGACACTCTCGAGCTCAACGATCGAC
TAAACAAGATCGATAATACCCTAAATGCCTACAATAACTTTCGAAGAGAT
CGATGGCGAGCCTTGGGCATGGCTGCCGTCTCTCTGCTGGCCATTTCGAT
TCTGGTCGGCCTGGATGTAGGGACGTGGATGCGCATTGCCCAGGATATGA
ACATAGCTCAGTCGGATACGGAGCTCAATGTGCACTGGTACATTCCATTC
TATAGTCTTTACTTCATCCTCACGGGCTTGCAGGTTAACATTGCCAACAC
GGCCTATGGACTAGGAAGGCGCTTTGGCCGTCTGAACCGAATGCTTTCGA
GCAGCTTTCTTGCAGAGAACAATGCAACCAGTGCCATCAAGCCACAAAAG
GTCAGCACCGTGAAGAACGTTAGCGTAAATCGGCCAGCGATGCCATCGGC
ACTCCACGCGAGCCTGACGAAGCTGAACGGCGAAACCTTGCCCAGTGAAG
CCGCAGCCAAGAACAAGGGGTTGCTCCTCAAATCCCTGGCGGACAGTCAC
GAGTCGCTGGGAAAATGTGTCCACCTCCTGTCCAACTCCTTCGGCATTGC
GGTTCTCTTCATCCTGGTGTCCTGTCTGCTGCACCTCGTGGCTACGGCCT
ACTTCCTCTTTCTGGAACTGCTCAGCAAGCGGGATAACGGCTACCTGTGG
GTGCAGATGCTCTGGATTTGCTTTCACTTCCTGCGACTGCTCATGGTGGT
GGAGCCGTGCCACTTGGCTGCCCGAGAGTCCCGTAAAACGATCCAGATTG
TTTGCGAAATCGAGCGGAAAGTGCACGAGCCCATTCTCGCGGAGGCAGTT
AAGAAGTTTTGGCAGCAGTTACTCGTCGTAGATGCTGACTTCTCCGCCTG
CGGATTGTGCCGCGTGAACCGCACCATTCTGACATCGTTTGCATCCGCCA
TAGCCACCTATCTCGTGATTCTCATTCAGTTTCAACGGACCAATGGCTAA
AAGCTTTCTAGACCAT
BS19991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-RA | 1284 | CG1712-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| Gr43a-RB | 1350 | CG1712-PB | 1..790 | 17..806 | 3950 | 100 | Plus |
| Gr43a-RC | 1362 | CG1712-PC | 1..802 | 17..806 | 3795 | 98.5 | Plus |
| Gr43a-RB | 1350 | CG1712-PB | 854..1350 | 804..1300 | 2485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-RA | 1449 | CG1712-RA | 13..1297 | 17..1301 | 6425 | 100 | Plus |
| Gr43a-RB | 1515 | CG1712-RB | 13..802 | 17..806 | 3950 | 100 | Plus |
| Gr43a-RC | 1527 | CG1712-RC | 13..814 | 17..806 | 3795 | 98.5 | Plus |
| Gr43a-RB | 1515 | CG1712-RB | 866..1363 | 804..1301 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7391147..7391498 | 1237..886 | 1760 | 100 | Minus |
| 2R | 25286936 | 2R | 7392142..7392306 | 521..357 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 7392996..7393149 | 170..17 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 7391896..7392040 | 665..521 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 7391700..7391843 | 806..663 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 7392372..7392505 | 358..225 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 7391555..7391636 | 885..804 | 410 | 100 | Minus |
| 2R | 25286936 | 2R | 7391021..7391085 | 1301..1237 | 325 | 100 | Minus |
| 2R | 25286936 | 2R | 7392878..7392933 | 225..170 | 280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dm88 | 4558 | Dm88 DM88 4558bp | 2777..2871 | 925..835 | 131 | 65.6 | Minus |
BS19991.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:40 Download gff for
BS19991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1294 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:48 Download gff for
BS19991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1294 | 17..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:00 Download gff for
BS19991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr43a-RA | 13..1294 | 17..1298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:00 Download gff for
BS19991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7391700..7391840 | 666..806 | 100 | <- | Minus |
| 2R | 7391555..7391633 | 807..885 | 100 | <- | Minus |
| 2R | 7391024..7391084 | 1238..1298 | 100 | <- | Minus |
| 2R | 7391147..7391498 | 886..1237 | 100 | <- | Minus |
| 2R | 7391896..7392039 | 522..665 | 100 | <- | Minus |
| 2R | 7392142..7392304 | 359..521 | 100 | <- | Minus |
| 2R | 7392372..7392504 | 226..358 | 100 | <- | Minus |
| 2R | 7392878..7392932 | 171..225 | 100 | <- | Minus |
| 2R | 7392996..7393149 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:48 Download gff for
BS19991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3279877..3280009 | 226..358 | 100 | <- | Minus |
| arm_2R | 3280383..3280437 | 171..225 | 100 | <- | Minus |
| arm_2R | 3279060..3279138 | 807..885 | 100 | <- | Minus |
| arm_2R | 3279205..3279345 | 666..806 | 100 | <- | Minus |
| arm_2R | 3279401..3279544 | 522..665 | 100 | <- | Minus |
| arm_2R | 3280501..3280654 | 17..170 | 100 | | Minus |
| arm_2R | 3279647..3279809 | 359..521 | 100 | <- | Minus |
| arm_2R | 3278529..3278589 | 1238..1298 | 100 | <- | Minus |
| arm_2R | 3278652..3279003 | 886..1237 | 100 | <- | Minus |
BS19991.pep Sequence
Translation from 16 to 1299
> BS19991.pep
MEISQPSIGIFYISKVLALAPYATVRNSKGRVEIGRSWLFTVYSATLTVV
MVFLTYRGLLFDANSEIPVRMKSATSKVVTALDVSVVVMAIVSGVYCGLF
SLNDTLELNDRLNKIDNTLNAYNNFRRDRWRALGMAAVSLLAISILVGLD
VGTWMRIAQDMNIAQSDTELNVHWYIPFYSLYFILTGLQVNIANTAYGLG
RRFGRLNRMLSSSFLAENNATSAIKPQKVSTVKNVSVNRPAMPSALHASL
TKLNGETLPSEAAAKNKGLLLKSLADSHESLGKCVHLLSNSFGIAVLFIL
VSCLLHLVATAYFLFLELLSKRDNGYLWVQMLWICFHFLRLLMVVEPCHL
AARESRKTIQIVCEIERKVHEPILAEAVKKFWQQLLVVDADFSACGLCRV
NRTILTSFASAIATYLVILIQFQRTNG*
BS19991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr43a-PA | 427 | CG1712-PA | 1..427 | 1..427 | 2155 | 100 | Plus |
| Gr43a-PB | 449 | CG1712-PB | 1..449 | 1..427 | 2122 | 95.1 | Plus |
| Gr43a-PC | 453 | CG1712-PC | 1..453 | 1..427 | 2107 | 94.3 | Plus |
| Gr28b-PA | 452 | CG13788-PA | 35..425 | 13..422 | 176 | 21 | Plus |
| Gr28b-PE | 447 | CG13788-PE | 27..420 | 12..422 | 170 | 20.7 | Plus |
