BS19996.complete Sequence
1169 bp assembled on 2011-01-07
GenBank Submission: KX802954
> BS19996.complete
GAAGTTATCAGTCGACATGGCTAATTACACAGTGGTGCGTGTGACAAAAG
TGCAACCATACCTGCATGTGGTGGACAGTGGTTATGCAGCTTTAGCCCAT
GTCGATAGCTTTTATGCGCCGACCTTGGAGGCCGGATTACTGGATTTCCA
TGCAAATGGCACTGCGACCCATGCCAATTTAACGGCGGAAAGAGTCCTCG
TCCTCATCGGCGAGGAAAACTACAGCTATCGATCGACCTCGACCATAGTC
CTCATGGTTTCCGCCTGGATCCTGCTCATTCTGGGCTTTGTCTTCTGCTG
CTGCGCCGAGTGCTGTGGCGTCAGCGTGTGGCGTGGCAAAAAGACACGGT
CCAGCATCGATATCGATGGCTTAAATCAGGCGGAACAAGGTGGAAATGGA
AATGGGAGTGCCTCCGCCCGCGATGCAACTGCAGACCGTGCCAATCACAG
TGATCCCACGATCGAGATCTGCCGCCGCTGTCCGCCGGACTACGAGGCGG
AGTCCCTGCCCTCGTACACGATTGTTTCCGGACTGCCGACGTACGATGAT
GCACTGGAGGAGTTCCGCAAGGCGGGCATTATCCTCACACCCGCCATGGT
GCCCATCATCAAGATCTTCGAGTGCAACGAGACCGGCAAGGAGCAGGCGG
TGGGCTACAGCCTGGTGGAGACGAACATAGCGAGTGCGGATGCTGCCGCG
GATAATGTGTCGCTGGCCTCGACCACCTGCAATTGTGGCAACTCCTCGCC
CACCTCATCGCTGCCCAGTTACAGTGCCGCCACGGCGGCTGTGATGGCAG
CGGCGGCTGCTGCTCCTCCCCAGGTGATCGAACTATCACCGGAACACCTG
GCCTCGTTGTCCCAGAAGCGTCTCTCCCTGCAGATCTCATTCAATAACTC
GGTGCGCCGGCAGTCGCCGCTCAGGAATCATCTGCTGAGATCCCGAGCGG
TGGGAAATACCGCCGGTGTTGGTCCATCGGAGGCAGCCGGTCCTGCCATT
CACGGGTCGGGAGCTCACGGAGTCCATGGCGGCGGAGGTGCAACCATTCT
GCCCGTTCTGCATCGCTCCTCCTCTACAATTTCACTGTCCAACGAACGCC
AGTTGCTGGATCAACGCCTCAGGCATTTGCATCATCGCGGTTCCCTCTAC
TGAAAGCTTTCTAGACCAT
BS19996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-RC | 1137 | CG42334-PC | 1..1137 | 17..1153 | 5685 | 100 | Plus |
| comm3-RE | 1272 | CG42334-PE | 554..1272 | 435..1153 | 3595 | 100 | Plus |
| comm3-RD | 1272 | CG42334-PD | 554..1272 | 435..1153 | 3595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-RC | 1402 | CG42334-RC | 145..1282 | 16..1153 | 5690 | 100 | Plus |
| comm3-RE | 2055 | CG42334-RE | 1217..1935 | 435..1153 | 3595 | 100 | Plus |
| comm3-RD | 1522 | CG42334-RD | 684..1402 | 435..1153 | 3595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15613304..15614025 | 1153..432 | 3610 | 100 | Minus |
| 3L | 28110227 | 3L | 15647200..15647618 | 434..16 | 2095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:24:25 has no hits.
BS19996.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:36 Download gff for
BS19996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RC | 121..1256 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:37 Download gff for
BS19996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RC | 146..1281 | 17..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:40:37 Download gff for
BS19996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm3-RC | 146..1281 | 17..1152 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:40:37 Download gff for
BS19996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15613305..15614022 | 435..1152 | 100 | <- | Minus |
| 3L | 15647200..15647617 | 17..434 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:37 Download gff for
BS19996.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15606405..15607122 | 435..1152 | 100 | <- | Minus |
| arm_3L | 15640300..15640717 | 17..434 | 100 | | Minus |
BS19996.pep Sequence
Translation from 16 to 1152
> BS19996.pep
MANYTVVRVTKVQPYLHVVDSGYAALAHVDSFYAPTLEAGLLDFHANGTA
THANLTAERVLVLIGEENYSYRSTSTIVLMVSAWILLILGFVFCCCAECC
GVSVWRGKKTRSSIDIDGLNQAEQGGNGNGSASARDATADRANHSDPTIE
ICRRCPPDYEAESLPSYTIVSGLPTYDDALEEFRKAGIILTPAMVPIIKI
FECNETGKEQAVGYSLVETNIASADAAADNVSLASTTCNCGNSSPTSSLP
SYSAATAAVMAAAAAAPPQVIELSPEHLASLSQKRLSLQISFNNSVRRQS
PLRNHLLRSRAVGNTAGVGPSEAAGPAIHGSGAHGVHGGGGATILPVLHR
SSSTISLSNERQLLDQRLRHLHHRGSLY*
BS19996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm3-PC | 378 | CG42334-PC | 1..378 | 1..378 | 1942 | 100 | Plus |
| comm3-PE | 423 | CG42334-PE | 186..423 | 141..378 | 1213 | 100 | Plus |
| comm3-PD | 423 | CG42334-PD | 186..423 | 141..378 | 1213 | 100 | Plus |
