BS20001.complete Sequence
2012 bp assembled on 2011-01-28
GenBank Submission: KX804258
> BS20001.complete
GAAGTTATCAGTCGACATGCGACACGCATTTGTTGGATTAATTGTGTGCT
GGCTGGCAGTTTGTCAACCGCAAGCTGAGGCGCAGTTTGGCGGCTTTGGA
TTCCAGCCACAGTTCGCCTACCAGCAGCCGCAGTTCCAACAGGTATACCG
CCAACCGCAGTTGCAACCGCAGGTGTATCGCCAACCACAGGCTTACCAAC
AACAACCTTTGGTTTATTACCAACAGCCCCAGCAGCCACAGCAGTTCCGC
CAGCGACAGGGATCCGTTTCCAAGGCGAACACGAATGCCTACGAGCGCCA
GGTGGACTTTGGCAACAACCTTGAGTACACCCAGGGTGTGTCCAATTCAC
GAGCGGTTACCAAACAGAATGGCCAGCGTGTGGTGACCAAGAGCCAGGCG
CAGACGAGGGATGTCGATCTGGGTGGTCTGCAGTTGGGCAACACACTAAC
CAGGACCAGGACGAATGCCAATGGTCAGGTGTCGCAGGGCATTGCCGATC
AGTTCCGCATCGGAAACGTGGGACTCGGAGCCTCGCTGTCGCCACAGAAT
CTTCAGAATGGCTTCGGACTGCAGCGTGGCGCCGATGGAGACCTTCGCCT
GGGCTTGGGTCTGCTCAACTTGGATCTTGACCGCAATGTGGCCAATTCGA
ACACCCTGTCGCAGGCGCAGGTAAATGCCAACGGCAAGGGTGCCCGGGCT
GGATCGAACAGCAACTCGCAGTCGAACACCCAGCACTTTGGCGGCGTCAC
CGTCACCGATACGCGCGCCAACTCGAATGCCTTTGGCAAGGCGCAAAGGG
GACAGACCTCGGCCACCACCGGCGGCTTCGGCGGCAATGCGGCCACCAAT
GGCCAGAGTTTCGGTGGTCCCTTCCAGCGAGTTGTGCGCCAGAATAGGCG
GCCCAAGCGAAAGGCTCAGTTCGTCCCCTTCGGGTATCCTCGAATTGGTT
TCGGCCCCGTCTTGAGTCCCTTGGAAAGACCGAGGAGGCAGTTCGGCAGG
CCGGGTTTCGGTGGACCAGGATTTGGAGGAGAATTCGGTGGAGGACCTGG
GTTTGGAGGACCTGGCTTTGGAGGTCCTGGTTTTGGAGGACCTGGCTTCG
AGCAGGAGTTCTACGAGCCCGAACGTCAGCAACACAAGAAGAAGGGTAAC
AAGAACCAGGCGCATGGCAATGCGAATGCCCAAGGTGGACCTGGATTCAA
CCAGCAGGCCTCGAGCAATAACCACGCCAGTCCCGGCAACACGGGCAGCA
GTTCCATCAGCTCCAATTTGGCCCAGGACGGCAGCAGTGGCCAGGTGAGC
TCGGCCAATACAAACACCCATCAGGGCCAAACGGCGAACGGTGGCTACCA
GAGTGACCAGAACTCGCAGAGCCAGGCGCTCAACTTCCGGCCGGGCGAGC
AGCAGGCCTCCAGCGCGAATGCGAACACTCAGCACACCCAGCAGGGCAAT
CGCGACACCTATGACTCGAACAGTGGATCCACCTCCACGAACAACAACAA
GTTTGGCTCCGCGACGAACACGGCCAACACGAACTCGCAGGTGGTCAGGG
ATGGCAATCGCCAGGATGCGACCAGCGATGCGAACAGTCAGAGCATCTTC
CAGGGCAACAATGGCCAGGGAGACGCCTCCGCTCAGACGAATGCGCAGAC
GAGCAGCCAGCAGGGGCCCGGAGGATTTATCAGCAACTCGGCCTCCAGCA
GTGCCACCGCCACCGCTGGGAATGGACAGTCGGCCAATGCGAATTCGAAC
GCGAATGCGGGCGGAGGTGTAGGTGGTGCGGGCGCAGGAGCCAATGCTGG
CGGATTTGGAGGCGGTGCTGATGCCAATTCCGGTGCCAATGGCGGTGGCG
GCAGTGCTGGAGCGAATGCCGGTGCCAATGGTGGCTTCGGTGGATTCGGT
GGATTCGGTGGCTTCGGCGGCGGCGGTGGCGGCGGTGCCAATGCGAACAG
CAATGCCTTTGGTGGCTACGATGGATTCGGATTCTTCGGACGTTAGAAGC
TTTCTAGACCAT
BS20001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3588-RH | 1980 | CG3588-PH | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| CG3588-RG | 1980 | CG3588-PG | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| CG3588-RE | 2676 | CG3588-PE | 1..1975 | 17..1991 | 9875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3588-RH | 2471 | CG3588-RH | 404..2383 | 17..1996 | 9900 | 100 | Plus |
| CG3588-RG | 2277 | CG3588-RG | 210..2189 | 17..1996 | 9900 | 100 | Plus |
| CG3588-RE | 2928 | CG3588-RE | 210..2184 | 17..1991 | 9875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2922414..2923380 | 1030..1996 | 4835 | 100 | Plus |
| X | 23542271 | X | 2921384..2922342 | 73..1031 | 4795 | 100 | Plus |
| X | 23542271 | X | 2920328..2920385 | 17..74 | 290 | 100 | Plus |
| 2L | 23513712 | 2L | 5958303..5958364 | 1100..1039 | 205 | 88.7 | Minus |
| 2L | 23513712 | 2L | 5958318..5958379 | 1100..1039 | 205 | 88.7 | Minus |
| 2L | 23513712 | 2L | 5958290..5958349 | 1098..1039 | 195 | 88.3 | Minus |
Blast to na_te.dros performed 2014-11-26 21:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3253..3333 | 1431..1510 | 123 | 63 | Plus |
BS20001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 17:06:52 Download gff for
BS20001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3588-RH | 404..2383 | 17..1996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:45 Download gff for
BS20001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3588-RG | 210..2189 | 17..1996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:38 Download gff for
BS20001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3588-RG | 210..2189 | 17..1996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:38 Download gff for
BS20001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2920328..2920385 | 17..74 | 100 | -> | Plus |
| X | 2921386..2922342 | 75..1031 | 100 | -> | Plus |
| X | 2922416..2923380 | 1032..1996 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:45 Download gff for
BS20001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2814361..2814418 | 17..74 | 100 | -> | Plus |
| arm_X | 2815419..2816375 | 75..1031 | 100 | -> | Plus |
| arm_X | 2816449..2817413 | 1032..1996 | 100 | | Plus |
BS20001.pep Sequence
Translation from 16 to 1995
> BS20001.pep
MRHAFVGLIVCWLAVCQPQAEAQFGGFGFQPQFAYQQPQFQQVYRQPQLQ
PQVYRQPQAYQQQPLVYYQQPQQPQQFRQRQGSVSKANTNAYERQVDFGN
NLEYTQGVSNSRAVTKQNGQRVVTKSQAQTRDVDLGGLQLGNTLTRTRTN
ANGQVSQGIADQFRIGNVGLGASLSPQNLQNGFGLQRGADGDLRLGLGLL
NLDLDRNVANSNTLSQAQVNANGKGARAGSNSNSQSNTQHFGGVTVTDTR
ANSNAFGKAQRGQTSATTGGFGGNAATNGQSFGGPFQRVVRQNRRPKRKA
QFVPFGYPRIGFGPVLSPLERPRRQFGRPGFGGPGFGGEFGGGPGFGGPG
FGGPGFGGPGFEQEFYEPERQQHKKKGNKNQAHGNANAQGGPGFNQQASS
NNHASPGNTGSSSISSNLAQDGSSGQVSSANTNTHQGQTANGGYQSDQNS
QSQALNFRPGEQQASSANANTQHTQQGNRDTYDSNSGSTSTNNNKFGSAT
NTANTNSQVVRDGNRQDATSDANSQSIFQGNNGQGDASAQTNAQTSSQQG
PGGFISNSASSSATATAGNGQSANANSNANAGGGVGGAGAGANAGGFGGG
ADANSGANGGGGSAGANAGANGGFGGFGGFGGFGGGGGGGANANSNAFGG
YDGFGFFGR*
BS20001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3588-PH | 659 | CG3588-PH | 1..659 | 1..659 | 3481 | 100 | Plus |
| CG3588-PG | 659 | CG3588-PG | 1..659 | 1..659 | 3481 | 100 | Plus |
| CG3588-PE | 891 | CG3588-PE | 1..658 | 1..658 | 3476 | 100 | Plus |
| CG3588-PI | 662 | CG3588-PI | 1..662 | 1..659 | 3467 | 99.5 | Plus |
| CG3588-PF | 631 | CG3588-PF | 1..631 | 1..659 | 3290 | 95.8 | Plus |
