BS20006.complete Sequence
1562 bp assembled on 2011-01-28
GenBank Submission: KX805242
> BS20006.complete
GAAGTTATCAGTCGACATGAGATTAGATGGGGCTCTAGAGCCCCGGCCCC
GTCAAGGAGCTGCCACAATCAAGGGCCGCCAGCCCCTGAGGCGCGAAACA
CGCGAACCATGTGAGACGCAACAGCAGCAGCCAGCTGACGAAGACGACGA
GGCCACAGACGCTGAGTGTTTGACCACCAACAGCAGCAGCAGCAGCAGCA
GCACCAGCAGCACCAGCAGCAACAATTGCCAAGCCAACTTGGTCTGCAAT
CCAAAGAGAACAACATCAGCAACGCCCACGCCTAGAAAAACAACCGGCGG
CAGAGGCAATACCAGGCATACCATATTAATGGCGCCCAACGTGGGGCATC
AGCGGAAGAGCCTTGGCCTGCGACTTCCGATGAAGCAGGGCCGCAGCCGG
CGGAGAATGATGGGTGCGGAATGGGGCTGGGAGCGCCTTAACGGCCTGCT
CCTGTGCCTGATTTCCGTTATTGCCCTGCTGCCGCCGCTGACGCTCGGCG
ATGACGGCGATAATTTCTTTGCCGTGAATGCCTTTAGTGCGGGTCCGGAG
ACGACAACGCCAGAGTTCGATTATGCCAGTCGTGGGCAGAAGAAGTTCGG
CGACAAGTGCGATAATACCCTGGAATGCGGCTTCCCCGGCTCCATCTGCG
ATCCCAAGAAGAAGTCCTGCCAGTGCACCGAGGATCTGCCCGTCACCAAT
CACTATGACAAATGTGGCAAAGAGGCCGCCGTGAACGAGTCCTGCTTCTT
TAACGAGCAGTGCGAGATGAGATACTTCCAGACGGAGTGCCGCGATGGAC
GCTGCATCTGCCGGTTCGAGATGTCACCCATTTGGGGCAAGGACGGATCC
GTGGAGTGCAAAGGGCGCCAGGACAAGAGGGGACCCGAGACCTACATCGA
CCCGGCCATGATTGGCGTGCTGGTAGGAATGGCATTGATGTTTGTTATTA
TTTGTGTCGTCCTGCGATTGTTTAGCCAAGCTCGCTGGCGTGAGAACCGA
ACCATCTTCAACACGCCCAATCCTCGCCTGATGAACGTCTCCCTGCTGCG
GGACAGCAAGCTGCTCCACGGCCAGGAGCGCCGAGGGTCCAGGATGTCGG
TGCGAGCGCCATCTCGTCAGCCCAGCATGGCCTCCCTGCGGCCCCACTCC
CCCAATCCGTCGCTAGGTAAGACAGGACGTATGATCCGGTCGAAGAGCAA
TACGCGGTCGAGTGACTCGCGGGTGAGCGATGTGTCCACCTGTTCGAGAC
TCCTGGAGCATCCGAGTGCCGCCAGCCAGCACAACCTGGTCCACAGCCAT
TTTCTGCCCTACGTGCCAACGACCACGGCCAGCACGGCAACGGCCACGAA
TGCCATCGCAACGTATGCTGCCTCGGCCACGCCCTCGCCCACGCCCACGC
CACCGCCCTCGGCGGGTCACCAATTGCCAATGGGCCATGCCAATGCCACC
AGCACCACGAGCACCGCCAACACCACCACCACCACCACCACGTATGTGTC
CCCGGCGGGAATAGCACCAGCCTGTGGTCGGACCAACAAGTTCTAGAAGC
TTTCTAGACCAT
BS20006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14509-RC | 1530 | CG14509-PC | 1..1530 | 17..1546 | 7650 | 100 | Plus |
| CG14509-RE | 1521 | CG14509-PE | 1..1521 | 17..1546 | 7480 | 99.4 | Plus |
| CG14509-RD | 1419 | CG14509-PD | 1..1160 | 17..1176 | 5800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14509-RC | 2372 | CG14509-RC | 268..1797 | 17..1546 | 7650 | 100 | Plus |
| CG14509-RE | 4716 | CG14509-RE | 268..1788 | 17..1546 | 7480 | 99.4 | Plus |
| CG14509-RD | 4231 | CG14509-RD | 269..1428 | 17..1176 | 5800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29181159..29181711 | 569..17 | 2765 | 100 | Minus |
| 3R | 32079331 | 3R | 29175058..29175430 | 1546..1174 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 29176545..29176742 | 1176..979 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 29178667..29178820 | 722..569 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 29177599..29177742 | 864..721 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 29177389..29177505 | 978..862 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:20:31 has no hits.
BS20006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:48 Download gff for
BS20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1797 | 17..1546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:24 Download gff for
BS20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1797 | 17..1546 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:48 Download gff for
BS20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14509-RC | 268..1797 | 17..1546 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:48 Download gff for
BS20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29175058..29175428 | 1176..1546 | 100 | <- | Minus |
| 3R | 29176546..29176742 | 979..1175 | 100 | <- | Minus |
| 3R | 29177389..29177503 | 864..978 | 100 | <- | Minus |
| 3R | 29177600..29177740 | 723..863 | 100 | <- | Minus |
| 3R | 29178667..29178819 | 570..722 | 100 | <- | Minus |
| 3R | 29181159..29181711 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:24 Download gff for
BS20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25003322..25003462 | 723..863 | 100 | <- | Minus |
| arm_3R | 25004389..25004541 | 570..722 | 100 | <- | Minus |
| arm_3R | 25000780..25001150 | 1176..1546 | 100 | <- | Minus |
| arm_3R | 25002268..25002464 | 979..1175 | 100 | <- | Minus |
| arm_3R | 25003111..25003225 | 864..978 | 100 | <- | Minus |
| arm_3R | 25006881..25007433 | 17..569 | 100 | | Minus |
BS20006.pep Sequence
Translation from 16 to 1545
> BS20006.pep
MRLDGALEPRPRQGAATIKGRQPLRRETREPCETQQQQPADEDDEATDAE
CLTTNSSSSSSSTSSTSSNNCQANLVCNPKRTTSATPTPRKTTGGRGNTR
HTILMAPNVGHQRKSLGLRLPMKQGRSRRRMMGAEWGWERLNGLLLCLIS
VIALLPPLTLGDDGDNFFAVNAFSAGPETTTPEFDYASRGQKKFGDKCDN
TLECGFPGSICDPKKKSCQCTEDLPVTNHYDKCGKEAAVNESCFFNEQCE
MRYFQTECRDGRCICRFEMSPIWGKDGSVECKGRQDKRGPETYIDPAMIG
VLVGMALMFVIICVVLRLFSQARWRENRTIFNTPNPRLMNVSLLRDSKLL
HGQERRGSRMSVRAPSRQPSMASLRPHSPNPSLGKTGRMIRSKSNTRSSD
SRVSDVSTCSRLLEHPSAASQHNLVHSHFLPYVPTTTASTATATNAIATY
AASATPSPTPTPPPSAGHQLPMGHANATSTTSTANTTTTTTTYVSPAGIA
PACGRTNKF*
BS20006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14509-PC | 509 | CG14509-PC | 1..509 | 1..509 | 2711 | 100 | Plus |
| CG14509-PE | 506 | CG14509-PE | 1..506 | 1..509 | 2681 | 99.4 | Plus |
| CG14509-PD | 472 | CG14509-PD | 1..431 | 1..428 | 2098 | 92.1 | Plus |
| CG14509-PB | 469 | CG14509-PB | 1..428 | 1..428 | 2088 | 91.8 | Plus |
