BS20021.complete Sequence
1598 bp assembled on 2011-01-07
GenBank Submission: KX803393
> BS20021.complete
GAAGTTATCAGTCGACATGGCGTCGCTTAAGTTCAAACGCATGCTCAACA
AGGAGCTGTCGCACTTTAGCGAGTCCAGCAGATCGGGAAATCAGATTTCC
GAATATATATGTTCCACATTTTTGGACAAGCAACAGGAGTTCGACTTGCC
ATCGCTGCGCGTGGAGGATAATCCCGAGCTGGTCGCCGCCAATGCAGCCG
CTGGTCAACAGTCCGCTGGACAGTATGCACGCTCCCGATCGCCGCGCGGT
CCGCCCATGTCGCAGATCAGCGGCGTGAAGAGACCGCTGTCGCATACGAA
TAGCTTTACCGGCGAACGTTTGCCCACCTTCGGTGTGGAGACACCCAGGG
AGAATGAGCTGGGCACGCTGCTCGGCGAACTGGACACCTGGGGTATTCAG
ATATTCAGCATCGGCGAGTTCAGTGTCAATCGACCGCTCACCTGTGTGGC
ATACACCATATTTCAGAGTAGAGAATTACTGACCAGTCTTATGATACCAC
CGAAAACTTTTCTTAACTTTATGTCTACTCTGGAGGACCACTACGTCAAA
GACAATCCGTTTCACAATTCGCTGCATGCCGCCGATGTGACACAAAGCAC
TAATGTGCTACTCAATACACCGGCGCTGGAGGGCGTATTCACGCCGCTCG
AAGTGGGCGGGGCGCTGTTCGCCGCTTGCATACACGATGTTGATCATCCC
GGCTTAACCAATCAGTTCTTGGTTAACTCAAGTTCCGAACTAGCATTAAT
GTACAATGACGAATCTGTTTTGGAAAATCATCATTTAGCTGTTGCCTTTA
AATTATTACAAAATCAAGGATGTGATATATTCTGTAATATGCAAAAGAAA
CAACGCCAAACATTGAGGAAAATGGTTATTGATATTGTGCTGTCCACGGA
CATGTCCAAGCACATGAGTCTGCTGGCCGACCTAAAGACAATGGTGGAAA
CCAAAAAGGTGGCCGGCTCCGGAGTACTGCTGCTGGACAACTACACCGAT
CGCATACAGGTGCTTGAGAATCTGGTGCACTGCGCCGATCTGAGCAATCC
CACCAAGCCGCTGCCGCTTTACAAGCGCTGGGTAGCCCTGCTCATGGAGG
AGTTCTTCCTGCAGGGCGATAAGGAACGCGAATCGGGCATGGACATTAGT
CCCATGTGCGATCGCCATAATGCCACCATTGAGAAGTCGCAGGTGGGCTT
CATCGACTACATCGTCCACCCGCTATGGGAGACCTGGGCGGACCTGGTGC
ATCCGGATGCCCAGGATATACTCGACACGCTTGAAGAGAACAGAGACTAC
TACCAGAGCATGATACCGCCTTCGCCGCCGCCATCGGGCGTCGATGAGAA
TCCGCAGGAGGACAGGATACGCTTTCAAGTAACCCTTGAGGAATCCGATC
AGGAGAACCTCGCCGAACTGGAGGAGGGCGACGAGAGTGGTGGCGAGAGC
ACCACCACAGGCACAACCGGAACCACCGCTGCATCCGCGCTAAGCGGAGC
TGGTGGCGGTGGCGGTGGAGGCGGGGGAATGGCACCCAGAACGGGTGGCT
GCCAAAACCAACCGCAACACGGTGGAATGTGAAAGCTTTCTAGACCAT
BS20021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RU | 2148 | CG32498-PU | 579..2148 | 13..1582 | 7850 | 100 | Plus |
| dnc-RT | 2148 | CG32498-PT | 579..2148 | 13..1582 | 7850 | 100 | Plus |
| dnc-RS | 3630 | CG32498-PS | 2061..3630 | 13..1582 | 7850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RU | 9456 | CG32498-RU | 3293..4862 | 13..1582 | 7850 | 100 | Plus |
| dnc-RT | 8691 | CG32498-RT | 2528..4097 | 13..1582 | 7850 | 100 | Plus |
| dnc-RS | 9576 | CG32498-RS | 3413..4982 | 13..1582 | 7850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3338446..3338818 | 1008..1380 | 1865 | 100 | Plus |
| X | 23542271 | X | 3337241..3337582 | 125..466 | 1710 | 100 | Plus |
| X | 23542271 | X | 3337686..3337955 | 464..733 | 1350 | 100 | Plus |
| X | 23542271 | X | 3338970..3339173 | 1379..1582 | 1020 | 100 | Plus |
| X | 23542271 | X | 3338215..3338380 | 847..1012 | 830 | 100 | Plus |
| X | 23542271 | X | 3338026..3338141 | 732..847 | 580 | 100 | Plus |
| X | 23542271 | X | 3334553..3334648 | 30..125 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:21:04 has no hits.
BS20021.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:08:25 Download gff for
BS20021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RN | 1387..2951 | 17..1581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:54 Download gff for
BS20021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RS | 3417..4981 | 17..1581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:21 Download gff for
BS20021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RS | 3417..4981 | 17..1581 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:21 Download gff for
BS20021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3338215..3338377 | 847..1009 | 100 | -> | Plus |
| X | 3337242..3337582 | 126..466 | 100 | -> | Plus |
| X | 3337689..3337953 | 467..731 | 100 | -> | Plus |
| X | 3338026..3338140 | 732..846 | 100 | -> | Plus |
| X | 3334555..3334648 | 32..125 | 100 | -> | Plus |
| X | 3338448..3338816 | 1010..1378 | 100 | -> | Plus |
| X | 3338970..3339172 | 1379..1581 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:54 Download gff for
BS20021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3232059..3232173 | 732..846 | 100 | -> | Plus |
| arm_X | 3228588..3228681 | 32..125 | 100 | -> | Plus |
| arm_X | 3231275..3231615 | 126..466 | 100 | -> | Plus |
| arm_X | 3231722..3231986 | 467..731 | 100 | -> | Plus |
| arm_X | 3232248..3232410 | 847..1009 | 100 | -> | Plus |
| arm_X | 3232481..3232849 | 1010..1378 | 100 | -> | Plus |
| arm_X | 3233003..3233205 | 1379..1581 | 100 | | Plus |
BS20021.pep Sequence
Translation from 16 to 1581
> BS20021.pep
MASLKFKRMLNKELSHFSESSRSGNQISEYICSTFLDKQQEFDLPSLRVE
DNPELVAANAAAGQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGE
RLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQ
SRELLTSLMIPPKTFLNFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLN
TPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDES
VLENHHLAVAFKLLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHM
SLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLP
LYKRWVALLMEEFFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIV
HPLWETWADLVHPDAQDILDTLEENRDYYQSMIPPSPPPSGVDENPQEDR
IRFQVTLEESDQENLAELEEGDESGGESTTTGTTGTTAASALSGAGGGGG
GGGGMAPRTGGCQNQPQHGGM*
BS20021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-PU | 715 | CG32498-PU | 195..715 | 1..521 | 2723 | 100 | Plus |
| dnc-PT | 715 | CG32498-PT | 195..715 | 1..521 | 2723 | 100 | Plus |
| dnc-PS | 1209 | CG32498-PS | 689..1209 | 1..521 | 2723 | 100 | Plus |
| dnc-PR | 703 | CG32498-PR | 183..703 | 1..521 | 2723 | 100 | Plus |
| dnc-PQ | 703 | CG32498-PQ | 183..703 | 1..521 | 2723 | 100 | Plus |
