BS20022.complete Sequence
3128 bp assembled on 2011-01-28
GenBank Submission: KX800581
> BS20022.complete
GAAGTTATCAGTCGACATGAGTCCGCCCCAACTTTTGAGCAAGGACTCCC
CAGATATTGAGGACCTGCTGTCGCTAAATCCGCGAGTGAAGACGCAGTGC
TCCGTGGTGCCCACCAAGCAGACGAAGGAGAACAAGAAGCACTGGAAACG
CAATGCGGATCACGCTGCTCCGCCGTGCACCACGCTGGCCAACGACTTCT
CGGACATCAAGCACACCACATTGTCGGAGCGCGGAGCTCTAGAGGAGGCG
GCCAGGTGCCTCAAATGCGCCGATGCTCCGTGCCAAAAGTCCTGTCCCAC
GCAGCTGGACATCAAGAGCTTCATTACGAGCATTGCGAATAAGAATTTCT
ATGGCGCCGCCAAGGCGATCTTCTCCGACAATCCGCTGGGTCTGACCTGC
GGCATGGTCTGTCCCACCAGCGATCTCTGCGTGGGCGGTTGCAATCTGCA
GGCCTCCGAGGCGGGACCGATTAACATTGGTGGCCTCCAGCAGTTCGCCA
CCGAGGTGTTCAAGAAGATGGGCGTGCGGCAGCGGAGGACACCGCAGGCG
GAGGCCAATCCGCTGTCGCAAAAGATCGCCCTCGTGGGCGGCGGACCGGC
ATCGCTGTCGTGCGCCACCTTCCTGGCCCGTCTGGGCTATCGGGATGTGA
CCATCTACGAGCGGAGAAGCTATCTGGGTGGCCTGAGTGCCGCTGAAATT
CCCCAGTATCGTCTGCCCATCGATGCGGTTAACTTTGAGATCGATTTGGT
TCGCGATCTGGGCGTACGCATCGAAACGGGTCGCTCGCTGGGCACCAAGG
ATTTGACCATCCAGGGACTCCTGTCCACCGGCCATGATGCCGTCTTTGTG
GGCATTGGCCTGCCGGAACCGAAGCTGAATCCCATTTTCGCTGGCCTTCA
GCCCAGCAATGGTTTCTACACCTCGAAAAACTTCCTGCCCTTGGTGTCGG
ATGGCTCGAAACCGGGTTTGTGCGCCTGCAAGGCAGCGGCCGGTTTACCC
AAGCTCCATGGCAATGTCATCGTTTTGGGTGCCGGTGATACGGCCTTCGA
TTGCGCCACTTCGGCGCTGAGATGTGGTGCTAGGCGTGTGTTCGTCGTCT
TCCGCAAAGGATCCTCCGGCATTCGTGCTGTGCCCGAAGAGGTGGAGCTG
GCGCGTGACGAACGCTGTGAGCTGTTGCCGTACCTGAGTCCACGCAAAGT
GATCGTCAAGGATGGCCTGATCACAGCCATGGAATTCTGTCGCACGGAGC
AGAACGAAAACGATGAATGGGTGGAGGATGAGGAGCAGACGCAGCGCTTG
AAGGCGAACTTTGTGATCTCCGCCTTTGGGTCCGGCCTGGAGGATCAGGA
TGTCAAGGCGGCACTAGCGCCGTTGCAATTCCGCGGCGAATTGCCCGTGG
TGGACAGGGTGACGATGCAGAGCAGTGTGAAACAGGTGTTCCTCGGCGGC
GATCTCGCTGGAGTGGCCAACACCACGGTGGAGTCGGTCAATGATGGCAA
GGTGGCCGCCTGGAGCATTCATTGTCAACTGCAGGGCCTGCCACTGGACA
CGCCGGCTGCACTGCCGCTCTTCTATACGGACATCGATGCCGTGGACATA
TCGGTGGAGATGTGCGGCATCCGGTTCGAGAATCCCTTTGGCCTGGCCTC
CGCACCGCCCACCACCAGCACGGCCATGATACGTCGCGCCTTCGAGCAGG
GCTGGGGCTTTGTGGTGACCAAGACGTTCGGTCTGGACAAGGATCTGGTC
ACGAATGTCTCGCCGCGCATCGTCAGGGGCACCACGTCGGGCTACAAGTA
TGGACCGCAGCAGGGCTGTTTCCTGAACATCGAACTAATCTCGGAGAAGC
GGGCCGAGTACTGGCTGAAATCGATTGGAGAACTGAAGCGTGACTTCCCC
GAGAAGATCGTGATAGCCAGCATTATGTGCAGCTTCAACGAGGAAGACTG
GACGGAGTTGGCCATTAAGGCGGAGCAGTCGGGTGCCGATGCCCTCGAGC
TGAATCTATCGTGTCCACATGGCATGGGCGAGCGAGGTATGGGCTTGGCC
TGTGGCCAGGATCCCGAGTTGGTGGAGCAGATCTCTCGCTGGGTGCGAAA
GGCGGTCAAGCTGCCCTTCTTCATCAAGCTAACGCCAAACATTACGGATA
TCGTTTCCATTGCGGCGGCCGCAAAGCGGGGAGGAGCCGATGGCGGATCG
GCCATCAACACCGTTCAGGGACTGATGGGCCTCAAGGCGGACTCCACCGC
CTGGCCGGCGATTGGCAAGGAGCAGCGCACCACTTACGGCGGCGTCTCCG
GCAATGCCACTCGTCCGATGGCTCTGAAGGCCATCTCTGATATTGCCAAC
CGTGTGCCGGGATTCCCCATTCTCGGTATCGGTGGCATCGATTCCGGTGA
GGTTGCGCTGCAGTTTATTCATGCGGGCGCCACTGTTCTGCAGATCTGCT
CCTCCGTACAGAACCAGGACTTCACCGTCATCGAGGACTATTGCACGGCA
CTGAAGGCACTGCTCTACCTGAAGGCGAATCCGCCACCAGTCGATGGTCC
CTTCTGGGATGGCCAGTCACCACCCACGCCGGTCCATCAGAAGGGCAAGC
CCGTTGTCCGTTTGACCGGCGAGGGCAAAGCCACGCTGGGTTTCTTTGGT
CCCTACCAGCGGCAGCGCGACATCAAGATGGCCGAGCTGCGAAGTCAGAA
GGGAGCTCTTTGGGATGCCGAGCAGGTGAAGGCCACTCCTCCGGCGTCCA
ATGGAGCACCCAATCCGGCACCAAGAATCAAGGATGTGATCGGAGCAGCG
CTAGACAAGATCGGGTCATACAACAAGCTGGATAACAAACAACAGAAGGT
GGCGCTCATCGATGATGACATGTGCATAAACTGCGGAAAGTGCTATATGA
CCTGCGCCGATTCCGGCTACCAGGCCATCGAATTCGACAAGGACACCCAC
ATTCCGCACGTGAACGACGATTGCACGGGCTGCACACTCTGCGTCTCCGT
TTGTCCCATCATCGACTGCATCACCATGGTGCCCAAGAAGATTCCGCACG
TGATCAAGCGAGGAGTCGAGGAGAAGATCTTCTACACCCACGCTCTCAGC
CAGTGCCAGTAAAAGCTTTCTAGACCAT
BS20022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-RC | 3096 | CG2194-PC | 1..3096 | 17..3112 | 15480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-RC | 3399 | CG2194-RC | 221..3319 | 17..3115 | 15495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9197268..9200075 | 2867..60 | 14040 | 100 | Minus |
| X | 23542271 | X | 9197053..9197210 | 3024..2867 | 790 | 100 | Minus |
| X | 23542271 | X | 9196888..9196978 | 3115..3025 | 455 | 100 | Minus |
| X | 23542271 | X | 9200132..9200177 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:21:37 has no hits.
BS20022.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:48 Download gff for
BS20022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 217..3310 | 17..3110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:50 Download gff for
BS20022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 217..3310 | 17..3110 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:11 Download gff for
BS20022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| su(r)-RC | 221..3314 | 17..3110 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:11 Download gff for
BS20022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9196893..9196978 | 3025..3110 | 100 | <- | Minus |
| X | 9197053..9197210 | 2867..3024 | 100 | <- | Minus |
| X | 9197269..9200073 | 62..2866 | 100 | <- | Minus |
| X | 9200133..9200177 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:50 Download gff for
BS20022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9090926..9091011 | 3025..3110 | 100 | <- | Minus |
| arm_X | 9091086..9091243 | 2867..3024 | 100 | <- | Minus |
| arm_X | 9091302..9094106 | 62..2866 | 100 | <- | Minus |
| arm_X | 9094166..9094210 | 17..61 | 100 | | Minus |
BS20022.pep Sequence
Translation from 16 to 3111
> BS20022.pep
MSPPQLLSKDSPDIEDLLSLNPRVKTQCSVVPTKQTKENKKHWKRNADHA
APPCTTLANDFSDIKHTTLSERGALEEAARCLKCADAPCQKSCPTQLDIK
SFITSIANKNFYGAAKAIFSDNPLGLTCGMVCPTSDLCVGGCNLQASEAG
PINIGGLQQFATEVFKKMGVRQRRTPQAEANPLSQKIALVGGGPASLSCA
TFLARLGYRDVTIYERRSYLGGLSAAEIPQYRLPIDAVNFEIDLVRDLGV
RIETGRSLGTKDLTIQGLLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGF
YTSKNFLPLVSDGSKPGLCACKAAAGLPKLHGNVIVLGAGDTAFDCATSA
LRCGARRVFVVFRKGSSGIRAVPEEVELARDERCELLPYLSPRKVIVKDG
LITAMEFCRTEQNENDEWVEDEEQTQRLKANFVISAFGSGLEDQDVKAAL
APLQFRGELPVVDRVTMQSSVKQVFLGGDLAGVANTTVESVNDGKVAAWS
IHCQLQGLPLDTPAALPLFYTDIDAVDISVEMCGIRFENPFGLASAPPTT
STAMIRRAFEQGWGFVVTKTFGLDKDLVTNVSPRIVRGTTSGYKYGPQQG
CFLNIELISEKRAEYWLKSIGELKRDFPEKIVIASIMCSFNEEDWTELAI
KAEQSGADALELNLSCPHGMGERGMGLACGQDPELVEQISRWVRKAVKLP
FFIKLTPNITDIVSIAAAAKRGGADGGSAINTVQGLMGLKADSTAWPAIG
KEQRTTYGGVSGNATRPMALKAISDIANRVPGFPILGIGGIDSGEVALQF
IHAGATVLQICSSVQNQDFTVIEDYCTALKALLYLKANPPPVDGPFWDGQ
SPPTPVHQKGKPVVRLTGEGKATLGFFGPYQRQRDIKMAELRSQKGALWD
AEQVKATPPASNGAPNPAPRIKDVIGAALDKIGSYNKLDNKQQKVALIDD
DMCINCGKCYMTCADSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIID
CITMVPKKIPHVIKRGVEEKIFYTHALSQCQ*
BS20022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| su(r)-PC | 1031 | CG2194-PC | 1..1031 | 1..1031 | 5408 | 100 | Plus |
