BS20036.complete Sequence
1490 bp assembled on 2011-01-07
GenBank Submission: KX805924
> BS20036.complete
GAAGTTATCAGTCGACATGGCCGATCCCAACGCCAAGCCCAAGTACACAA
AACTTTTCATCAACAATGAGTTCGTTGATTCGGTGTCGGGCAAGACCTTT
GCCACCTTCAATCCGGCTACATCCAAGGAGATTGTCCAAGTCTCCGAGGG
AGATAAGGCTGATATCGACCTGGCTGTGAAAGCGGCCAAGAAAGCCTTCC
ATCGCGACTCGGAATGGCGCAAATTGAGTCCTCTGCAGCGCACCAATTTG
ATGAACAAACTTTGTGCCCTGATGGATCGGGACAAGGCATTCCTGGCCAG
CTTGGAGACCCAGGACAATGGAAAGCCCTACGCTGAGGCCCTCTTCGATG
TGACCTACTCGATCCTGACGCTGCAGTACTACGCCGGCTGGACCGACAAG
TTCTTCGGCGACACCATTCCCGCTGGAGGCTTTGTCTCCATGACCCGCAA
GGAACCGGTGGGCGTGGTGGGCCAGATCATACCCTGGAACTATCCCCTGC
TGATGCTGGCCTGGAAGTGGGGCCCCGCTCTGGCCGTCGGATGCACCATC
ATCATGAAACCCGCGGAGCAAACTCCTCTGACTGCCCTTCACATGGCTGC
TTTGGCGAAGGAGGCAGGCTTCCCAGCCGGTGTGATCAATGTGGTCAACG
GATTTGGTCCCACTGCCGGTGCTGCTATCAGTGCTCATCCTGATATTGCC
AAGGTGGCTTTCACCGGCTCCGTGGAAATCGGTCGGATTGTCATGCAGGC
TGCAGCCACGTCGAACTTGAAGAGGGTCTCCCTGGAATTGGGCGGCAAGA
GCCCCGTTGTGGTCTTCGATGATGCGGACATTGACTTCGCCGTGGAAACC
ACCCACGAGGCTCTGTTCTCCAATCACGGCCAGAGCTGCTGTGCCGGCAG
TCGCACCTACGTTCACGAAAAGATCTACGACGAGTTCGTGGCCAAGGCAG
CTGCCAAGGCAAAGGCCCGCAAGGTGGGCAATCCTTTCGAGCAGAATGTG
CAGCAGGGTCCCCAGATCGACGATGACATGCTGACCAAGGTGTTGGGCTA
CATCGAGAGTGGCAAGAAGGAGGGTGCCAAGTTGCAGGCTGGTGGCAAGA
GGATCGGCAATGTCGGTTTCTTCGTTGAGCCCACTGTCTTCTCGGACGTG
AAGGATGATATGCGGATTGCCCAGGAGGAGATCTTTGGCCCCGTTCAGTC
GATCTTCAAGTTCAGCTCCCTGGAGGAGATGATCGATCGGGCCAACAATG
TGCAATATGGCCTGGCCGCCGGCGTTATTACCAATGACATCAACAAGGCA
CTGAAATTCGCCAACAATGTGGATGCCGGCTCCGTGTGGATCAACTGCTA
TGATGCCGTGCTGCCCTCCACCCCGTTCGGTGGATACAAGCACTCTGGCA
TTGGCAGGGAATTGGGCAAGGATGGCCTGGATAACTATCTGGAAACCAAG
ACCATCACCATGAAACTTCTTTAAAAGCTTTCTAGACCAT
BS20036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31075-RA | 1458 | CG31075-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| CG31075-RB | 1527 | CG31075-PB | 106..1527 | 53..1474 | 7110 | 100 | Plus |
| Aldh-RB | 1563 | CG3752-PB | 520..734 | 443..657 | 295 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31075-RA | 1634 | CG31075-RA | 75..1532 | 17..1474 | 7290 | 100 | Plus |
| CG31075-RB | 1764 | CG31075-RB | 241..1662 | 53..1474 | 7110 | 100 | Plus |
| Aldh-RB | 1900 | CG3752-RB | 729..943 | 443..657 | 295 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26985726..26986369 | 1474..831 | 3220 | 100 | Minus |
| 3R | 32079331 | 3R | 26986429..26987004 | 834..259 | 2865 | 99.8 | Minus |
| 3R | 32079331 | 3R | 26987233..26987338 | 158..53 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 26987062..26987164 | 258..156 | 515 | 100 | Minus |
| 2L | 23513712 | 2L | 9390396..9390610 | 443..657 | 295 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:28 has no hits.
BS20036.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:28 Download gff for
BS20036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31075-RA | 73..1528 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:32 Download gff for
BS20036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31075-RA | 75..1530 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:41 Download gff for
BS20036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31075-RA | 75..1530 | 17..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:41 Download gff for
BS20036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26985728..26986369 | 831..1472 | 100 | <- | Minus |
| 3R | 26986433..26987004 | 259..830 | 100 | <- | Minus |
| 3R | 26987062..26987162 | 158..258 | 100 | <- | Minus |
| 3R | 26987234..26987338 | 53..157 | 100 | <- | Minus |
| 3R | 26988408..26988443 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:32 Download gff for
BS20036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22811450..22812091 | 831..1472 | 100 | <- | Minus |
| arm_3R | 22812155..22812726 | 259..830 | 100 | <- | Minus |
| arm_3R | 22812784..22812884 | 158..258 | 100 | <- | Minus |
| arm_3R | 22812956..22813060 | 53..157 | 100 | <- | Minus |
| arm_3R | 22814130..22814165 | 17..52 | 100 | | Minus |
BS20036.pep Sequence
Translation from 16 to 1473
> BS20036.pep
MADPNAKPKYTKLFINNEFVDSVSGKTFATFNPATSKEIVQVSEGDKADI
DLAVKAAKKAFHRDSEWRKLSPLQRTNLMNKLCALMDRDKAFLASLETQD
NGKPYAEALFDVTYSILTLQYYAGWTDKFFGDTIPAGGFVSMTRKEPVGV
VGQIIPWNYPLLMLAWKWGPALAVGCTIIMKPAEQTPLTALHMAALAKEA
GFPAGVINVVNGFGPTAGAAISAHPDIAKVAFTGSVEIGRIVMQAAATSN
LKRVSLELGGKSPVVVFDDADIDFAVETTHEALFSNHGQSCCAGSRTYVH
EKIYDEFVAKAAAKAKARKVGNPFEQNVQQGPQIDDDMLTKVLGYIESGK
KEGAKLQAGGKRIGNVGFFVEPTVFSDVKDDMRIAQEEIFGPVQSIFKFS
SLEEMIDRANNVQYGLAAGVITNDINKALKFANNVDAGSVWINCYDAVLP
STPFGGYKHSGIGRELGKDGLDNYLETKTITMKLL*
BS20036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31075-PA | 485 | CG31075-PA | 1..485 | 1..485 | 2512 | 100 | Plus |
| CG31075-PB | 508 | CG31075-PB | 30..508 | 7..485 | 2461 | 99.2 | Plus |
| Aldh-PB | 520 | CG3752-PB | 39..515 | 10..484 | 1413 | 56.5 | Plus |
| Aldh-PA | 520 | CG3752-PA | 39..515 | 10..484 | 1413 | 56.5 | Plus |
| CG8665-PA | 913 | CG8665-PA | 433..912 | 11..483 | 1079 | 45 | Plus |
