BS20040.complete Sequence
1706 bp assembled on 2011-01-07
GenBank Submission: KX805321
> BS20040.complete
GAAGTTATCAGTCGACATGCGACCTCTCCAGCGTGTGCGGCAGTTGCTGA
GCCTCGGAACACGGATTCGAGGCAAAAGAGCACTCAATGGCCTGCGAGAG
GCGAATGTCCAGAAAGGCGGTCGTCCTGTATTGCGATTTAGTCTTTTGGC
AGCCGGCGCAGGTGGCCTGGCTTACGATGGGATAGTAAATGACTTCACCT
ACTGCGGCGCCTCCGTGCGATTTGTACGATCCTTAAAAACAGCCGGATTG
ATAGCCGCTGACTATCTGCGGCTGGACGAGAACGATCCGGAGTACGAAAC
AAAGGTGAAGCTGCTCCACAAGAAGAGTGCCGAGCGTCTGCTGGAGACGT
GCCTGCTCAACGGCGGTCTGTACATCAAGGTGGGCCAGGGATTCGCGGCC
ATCAATGACATTCTGCCCGTGGAATACACCAGCACGCTGTCCCTGCTGCA
GGATAGATGTCTGCCCACCACTCAAGCTGATGTTCAGAAGGTCTTTCGCA
AGGATTTTGGCCAGTTGCCCGAGGAGATATACCAGGAGTTCGACTATCAG
CCCGTGGCGGCCGCCAGCTTGGCGCAGGTTTTCAAAGCCAGGCTGCCCAG
CGGCGAGCAGGTGGCCGTCAAGGTGCAATACAACGATCTGCAGAAGAGAT
TCATCAGCGACCTAGGCACCATCATCTTTCTTCAGGACATTGTCGAGTTC
TTCTTTAAGGACTACAACTTTGGATGGATCTTGAATGACCTGCGTAAGAA
CCTGGTGCTGGAGCTGAACTTTTTGCAGGAGGGACAAAATGCCGAACGCT
GCGCCAAGGATATGGAAAAGTTCAGCTATGTCCACGTTCCCAAGGTGCAT
TGGTCGTATACTAAAACGCGCGTGCTCACTCTTGAGTGGATGGATGGATG
CAAGATCAGCGATCTTAAGACGATTGAAAAAGAAAAACTCAGCTTAAAGG
ACATCGATGTGAAGCTCTTTGAGGCCTTTGCTGAACAGATTTTCTACACT
GGCTTCGTGCACGCCGATCCCCATCCAGGAAATATTTTTGTGAGAAAAAA
TAGAAAAAACGGGCGTGCGGACATCATCTTGCTGGATCATGGACTTTACG
AAGAACTGCCTCAAAATGTGCGAGGTCCACTCTGCGAATTCTGGGAGGCC
ACCGTTCTGCGCCAAGAGAATCGGATGCAGGCCGCCGCCGAGAAGATCGG
TATCGGTGACTACATGCGCTTCGCCGAAGTGCTTTTCCAGCAGCCCATCC
GGAATCGAGGTGGTGGCATACGCGGCAAACTGACGCAGGAGGACATCGAT
CACATGCAGGAGATAGCCAGGAATAATTTCGAGCACATCATGGGCACCCT
GAAGGAGATGCCCAGAAGCATGTTGTTCGTGGTGCGTAATCTGAACACAG
TGCGTGCCATTAGTCATCAGCATGGAGACGTGGTGAATCGTCCTCGGGTC
ATGGCGCGATATGCCCAGAAATGCCTGTATATGCAGCACAATAGAAGGTC
TCCCGTGCAATATATCCGTTGGCTAAGTGGACGCATATACTTCGAATACT
GTCTGTTTCTGTCAGCCTTCAAGCTATATCTGCTCGACTGGTACTTCAAC
ATCCTGTACCTAGTGGGTCGGGCTCCTGCCTCTGCGAGAACCGTAATGAA
AGATATAATGCAACCTCCGGAGCCGAATGTGTTGAAATAAAAGCTTTCTA
GACCAT
BS20040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7616-RB | 1674 | CG7616-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| CG7616-RA | 1674 | CG7616-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7616-RB | 2063 | CG7616-RB | 62..1735 | 17..1690 | 8370 | 100 | Plus |
| CG7616-RA | 2320 | CG7616-RA | 319..1992 | 17..1690 | 8370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11170208..11171046 | 30..868 | 4195 | 100 | Plus |
| 3L | 28110227 | 3L | 11171362..11171710 | 1035..1383 | 1745 | 100 | Plus |
| 3L | 28110227 | 3L | 11171774..11172083 | 1381..1690 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 11171129..11171295 | 868..1034 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:53 has no hits.
BS20040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:29 Download gff for
BS20040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7616-RA | 338..2009 | 17..1688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:36 Download gff for
BS20040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7616-RA | 319..1990 | 17..1688 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:50 Download gff for
BS20040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7616-RA | 319..1990 | 17..1688 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:50 Download gff for
BS20040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11170210..11171046 | 32..868 | 100 | -> | Plus |
| 3L | 11171130..11171295 | 869..1034 | 100 | -> | Plus |
| 3L | 11171362..11171708 | 1035..1381 | 100 | -> | Plus |
| 3L | 11171775..11172081 | 1382..1688 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:36 Download gff for
BS20040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11163310..11164146 | 32..868 | 100 | -> | Plus |
| arm_3L | 11164230..11164395 | 869..1034 | 100 | -> | Plus |
| arm_3L | 11164462..11164808 | 1035..1381 | 100 | -> | Plus |
| arm_3L | 11164875..11165181 | 1382..1688 | 100 | | Plus |
BS20040.pep Sequence
Translation from 16 to 1689
> BS20040.pep
MRPLQRVRQLLSLGTRIRGKRALNGLREANVQKGGRPVLRFSLLAAGAGG
LAYDGIVNDFTYCGASVRFVRSLKTAGLIAADYLRLDENDPEYETKVKLL
HKKSAERLLETCLLNGGLYIKVGQGFAAINDILPVEYTSTLSLLQDRCLP
TTQADVQKVFRKDFGQLPEEIYQEFDYQPVAAASLAQVFKARLPSGEQVA
VKVQYNDLQKRFISDLGTIIFLQDIVEFFFKDYNFGWILNDLRKNLVLEL
NFLQEGQNAERCAKDMEKFSYVHVPKVHWSYTKTRVLTLEWMDGCKISDL
KTIEKEKLSLKDIDVKLFEAFAEQIFYTGFVHADPHPGNIFVRKNRKNGR
ADIILLDHGLYEELPQNVRGPLCEFWEATVLRQENRMQAAAEKIGIGDYM
RFAEVLFQQPIRNRGGGIRGKLTQEDIDHMQEIARNNFEHIMGTLKEMPR
SMLFVVRNLNTVRAISHQHGDVVNRPRVMARYAQKCLYMQHNRRSPVQYI
RWLSGRIYFEYCLFLSAFKLYLLDWYFNILYLVGRAPASARTVMKDIMQP
PEPNVLK*
BS20040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7616-PB | 557 | CG7616-PB | 1..557 | 1..557 | 2902 | 100 | Plus |
| CG7616-PA | 557 | CG7616-PA | 1..557 | 1..557 | 2902 | 100 | Plus |
| CG3608-PB | 518 | CG3608-PB | 4..442 | 36..465 | 672 | 34.8 | Plus |
| CG3608-PA | 518 | CG3608-PA | 4..442 | 36..465 | 672 | 34.8 | Plus |
| CG32649-PA | 661 | CG32649-PA | 272..511 | 99..339 | 168 | 21.8 | Plus |
