Clone BS20053 Report

Search the DGRC for BS20053

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:200
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG7488-RA
Protein status:BS20053.pep: full length peptide match
Sequenced Size:1154

Clone Sequence Records

BS20053.complete Sequence

1154 bp assembled on 2011-01-07

GenBank Submission: KX805926

> BS20053.complete
GAAGTTATCAGTCGACATGCGCTATAATCTGTTAGCCAGTTCGTTAAAAT
TGCTGAATAGCACGAAAACCCACAATTTGTTCTTGGTGAACGTGCGCAGC
TTGACCGGCGCCGCCCACACCAACGATGCAGTGGCTCCGACCACGCGCCC
ACCGCCCGCAGAATCGAGGAATCCCGGAGAGGAGCAACGATCACTGCACA
TCGCGGTAATTGGAGTGCCCAATGTGGGAAAGAGCACGTTCATCAACAAC
ACGGTGAACCACCGAGTGTGTCCCACCTCGGCCAAGGTGCACACCACTCG
GCAGTCGAACACGGCCATTTACACCACCGGCCAGACGCAGTTGGTCTTTT
ACGATACGCCGGGCCTGGTCACGCAACATGAGATTCGTCGGCACCACCTG
GACCAGAACTTTAAGAGTGCCTACCGCCATGCCATACAGCATGCGGACAT
CATCGCCGTGGTGCACGATGCCTCAAATGCCTGGACTAGGAAGGAACTGC
ATCCCACTGTCTTGGATACGCTGAAGGCGTATAGCAACCTGCCCAGTTTC
CTGGTGCTGAATAAGATAGACGCCCTGAAGTCGAAGCGTTTGCTGTTGGA
TCTGATCAAGACACTCACCAACGACACCTTGACAGTTGGCAAGCGGGAAG
TCCAGGCAAAAAGTGCTCTCGCCAAGGAAATAAGAATCAACAAGCGGGAG
TCTAGCTGGAGCCATTTTAGCGACGTGTTTCTTGTTTCCGCCTTGACCGG
CAATGGGCTGCAGGAGATGCAGAACTACCTGGTGGGCCAGGCTAAGCCCA
GGGATTGGAAATACCCAGCTGACATTCATACGGACTCCAGCCCAGAAGCA
TTAATTGTGGAGAGTGTGCGGGCTCGTCTGCTGGACTACTTGCCGCAGGA
GATACCCTACAACCTTAAGTGCGAGATCGAGTACTACAGTGTGGAAAAAA
ATGTTGTCTACACATCCGTGCAGGTTCAGTGCCCCACCACGCGAATCGAG
CGCCTAATCTGTGGCGAGGGTAATGGCAAGCTGCGGCAGATCACGGAGCG
AGTTACATCAGACCTGGTGGAGATGTTCGGCCAAGCAGTGTCCCTTACTA
TATCTACAGTTTCCAAGGGCAAGAAGACCGCCGCTTGAAAGCTTTCTAGA
CCAT

BS20053.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-RA 1122 CG7488-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-RA 1249 CG7488-RA 72..1193 17..1138 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12995691..12996624 17..950 4670 100 Plus
3R 32079331 3R 12996682..12996869 951..1138 940 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:37:38 has no hits.

BS20053.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-07 15:09:28 Download gff for BS20053.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 45..1165 17..1137 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:34 Download gff for BS20053.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 72..1192 17..1137 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:44 Download gff for BS20053.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 72..1192 17..1137 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:44 Download gff for BS20053.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12995691..12996624 17..950 100 -> Plus
3R 12996682..12996868 951..1137 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:34 Download gff for BS20053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8822404..8822590 951..1137 100   Plus
arm_3R 8821413..8822346 17..950 100 -> Plus

BS20053.pep Sequence

Translation from 16 to 1137

> BS20053.pep
MRYNLLASSLKLLNSTKTHNLFLVNVRSLTGAAHTNDAVAPTTRPPPAES
RNPGEEQRSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTA
IYTTGQTQLVFYDTPGLVTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVH
DASNAWTRKELHPTVLDTLKAYSNLPSFLVLNKIDALKSKRLLLDLIKTL
TNDTLTVGKREVQAKSALAKEIRINKRESSWSHFSDVFLVSALTGNGLQE
MQNYLVGQAKPRDWKYPADIHTDSSPEALIVESVRARLLDYLPQEIPYNL
KCEIEYYSVEKNVVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDL
VEMFGQAVSLTISTVSKGKKTAA*

BS20053.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-PA 373 CG7488-PA 1..373 1..373 1910 100 Plus